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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgtttttaatgtccttgtttatcacatactcttttcaatcattataattttattaggtttgtagtcattttttaaatcacagGAACGACAAGAAGAAGTAGATCAGCTTTTAGACAAGACGCGACTAGAAATGCATGGGGTAGTGCAGTCGGGAGGCCGTTCTCCAAAACCTTTGAATGCTC

Basic information

species Vitis vinifera
transcript Vv14s0066g01720.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0066g01720.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA13G04440.1 (Glycine max), 3'ss of exon 1
gtgagtgtttttaatgtccttgtttatcacatactcttttcaatcattataattttattaggtttgtagtcattttttaaatcacagGAACGACAAGAAGAAGTAGATCAGCTTTTAGACAAGACGCGACTAGAAATGCATGGGGTAGTGCAGTCGGGAGGCCGTTCTCCAAAACCTTTGAATGCTC
|| ||| || ||       || ||| ||  ||| |  | |  || |||||  | ||  ||  | | |  ||  ||  | |||  ||||||||||| ||||||||  | ||||| |||||||||||   |||||||||||||||||  |||||||| |||||||||||||| || || ||||||| ||
gttagttttcttctctcttttttttgtcgaataattgtgt--ataattattttatttatacatat-tgatcggttgatgaatt-cagGAACGACAGGAAGAAGTTAACCAGCTATTAGACAAGACAAAACTAGAAATGCATGGGGCTGTGCAGTCAGGAGGCCGTTCTCCGAAGCCCTTGAATGGTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actcttttcaatcattataattttattaggtttgtagtcattttttaaatcacagGAACGACAAGAAGAAGTAGATCAGCTTTTAGACAAGACGCGACTAGAAATGCATGGGGTAGTGCAGTCGGGAGGCCGTTCTCCAAAACCTTTGAATGCTC
                                     tcatttttt  CT-rich tract
             attataattttattag  TA-rich tract