1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ccaattcatgatctcgtgatttacaatcataattcattgaatatactgtgagaacattttctaatggtggttttttctctcattcttaatacatttgcagGTGTTGGTTACATCATTTAGCGAGCTTGATAAGAATGAATATCTAGACCCAAGAACTGCCCATGTTGCTATAATTGACCACGTTAAACAA
species | Vitis vinifera |
transcript | Vv14s0060g02220.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACAACAAATCTCACATGATTTGCCTCGAAATGCCCGGCACAACTGGAGAT GTGTTGGTTACATCATTTAGCGAGCTTGATAAGAATGAATATCTAGACCCAEST: gi|110386543|gb|EC951144.1|EC951144
genomic: ACAACAAATCTCACATGATTTGCCTCGAAATGCCCGGCACAACTGGAGATgtgagtctca ... acatttgcagGTGTTGGTTACATCATTTAGCGAGCTTGATAAGAATGAATATCTAGACCCA
EST: ATCTCACATGATTTGCCTCGAAATGCCCGGCACAACTGGAGAT GTGTTGGTTACATCATTTAGCGAGCTTGATAAGAACGAATATCTAGACCCAEST: gi|110713063|gb|EE088666.1|EE088666
genomic: ATCTCACATGATTTGCCTCGAAATGCCCGGCACAACTGGAGATgtgagtctca ... acatttgcagGTGTTGGTTACATCATTTAGCGAGCTTGATAAGAATGAATATCTAGACCCA
EST: ACAACAAATCTCACATGATTTGCCTCGAAATGCCCGGCACAACTGGAGAT GTGTTGGTTACATCATTTAGCGAGCTTGATAAGAACGAATATCTAGACCCA
genomic: ACAACAAATCTCACATGATTTGCCTCGAAATGCCCGGCACAACTGGAGATgtgagtctca ... acatttgcagGTGTTGGTTACATCATTTAGCGAGCTTGATAAGAATGAATATCTAGACCCA
ctgtgagaacattttctaatggtggttttttctctcattcttaatacatttgcagGTGTTGGTTACATCATTTAGCGAGCTTGATAAGAATGAATATCTAGACCCAAGAACTGCCCATGTTGCTATAATTGACCACGTTAAACAA
attcttaatacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccaattcatgatctcgtgatttacaatcataattcattgaatatactgtgagaacattttctaatggtggttttttctctcattcttaatacatttgcagGTGTTGGTTACATCATTTAGCGAGCTTGATAAGAATGAATATCTAGACCCAAGAACTGCCCATGTTGCTATAATTGACCACGTTAAACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - catgatc
- - - - - - - - - - - acaatca
- - - - - - - - - - - - - - - - - - - - - - - - -gagaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atggtgg