1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttgcccttttttatctggctcatggtttgtgttgtataatctgtgtgtttcattcctttgactgtctcactacaatgagatatttcctctctatatgcagATTGTTTGAGTTGTATGCTCAGGAGGGAAACATAAAACTGTTGGCCAAAAAGCTAAATGCTCTCGAAGGTGTGGGTCCACAGAAATGCCTAGCTTTTAGT
species | Vitis vinifera |
transcript | Vv13s0074g00010.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CACCCTAGTGGTGACGAATTAGTGTGCTCTACCACCACCGGTGACTGCAA ATTGTTTGAGTTGTATGCTCAGGAGGGAAACATAAAACTGTTGGCCAAAAAEST: gi|294967128|gb|GW840003.1|GW840003
genomic: CACCCTAGTGGTGACGAATTAGTGTGCTCTACCACCACCGGTGACTGCAAgtgagtttct ... ctatatgcagATTGTTTGAGTTGTATGCTCAGGAGGGAAACATAAAACTGTTGGCCAAAAA
EST: CACTCTAGTGGTGACGAATTAGTGTGCTCTACCACCACCGGTGACTGCAA ATTGTTTGAGTTGTATGCTCAGGAGGGAAACATAAAACTGTTGGCCAAAAA
genomic: CACCCTAGTGGTGACGAATTAGTGTGCTCTACCACCACCGGTGACTGCAAgtgagtttct ... ctatatgcagATTGTTTGAGTTGTATGCTCAGGAGGGAAACATAAAACTGTTGGCCAAAAA
tgtttcattcctttgactgtctcactacaatgagatatttcctctctatatgcagATTGTTTGAGTTGTATGCTCAGGAGGGAAACATAAAACTGTTGGCCAAAAAGCTAAATGCTCTCGAAGGTGTGGGTCCACAGAAATGCCTAGCTTTTAGT
gtctcac putative branch site (score: 3)
tatttcctctctat putative PPT
agatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgcccttttttatctggctcatggtttgtgttgtataatctgtgtgtttcattcctttgactgtctcactacaatgagatatttcctctctatatgcagATTGTTTGAGTTGTATGCTCAGGAGGGAAACATAAAACTGTTGGCCAAAAAGCTAAATGCTCTCGAAGGTGTGGGTCCACAGAAATGCCTAGCTTTTAGT
-tgccctt
- - - - - - - - - ctcatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caatgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttcctct