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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gacacattgtttgagtgaaataactaaattagtggaatacttgaaaattagtgacttatacattagtgtggcttccattcacaacattgttcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC

Basic information

species Vitis vinifera
transcript Vv11s0065g00320.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351043926|gb|FQ431357.1|FQ431357
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|351031738|gb|FQ459995.1|FQ459995
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|351021488|gb|FQ446032.1|FQ446032
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|110731755|gb|EE106442.1|EE106442
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|352794354|gb|FQ481585.1|FQ481585
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|161709367|gb|FC059696.1|FC059696
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|110385861|gb|EC950417.1|EC950417
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|349822011|gb|FQ408340.1|FQ408340
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|351026847|gb|FQ436500.1|FQ436500
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|351025243|gb|FQ433660.1|FQ433660
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|351045391|gb|FQ447656.1|FQ447656
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|351041115|gb|FQ444092.1|FQ444092
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|351022613|gb|FQ447135.1|FQ447135
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|351040449|gb|FQ434582.1|FQ434582
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|349809487|gb|FQ414377.1|FQ414377
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|349824245|gb|FQ417632.1|FQ417632
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTGCTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|351016593|gb|FQ424020.1|FQ424020
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATTG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|110689479|gb|EE065738.1|EE065738
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|352786908|gb|FQ481283.1|FQ481283
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|351043726|gb|FQ431079.1|FQ431079
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|351025600|gb|FQ426614.1|FQ426614
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|351025823|gb|FQ427835.1|FQ427835
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|351038974|gb|FQ457649.1|FQ457649
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|351018428|gb|FQ439240.1|FQ439240
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|37183940|gb|CF603294.1|CF603294
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|351036694|gb|FQ457407.1|FQ457407
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|351031403|gb|FQ445428.1|FQ445428
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|351029736|gb|FQ427576.1|FQ427576
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|351032941|gb|FQ461830.1|FQ461830
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|349829562|gb|FQ420094.1|FQ420094
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|294965672|gb|GW837271.1|GW837271
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCCCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|351051948|gb|FQ450639.1|FQ450639
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|351024691|gb|FQ433106.1|FQ433106
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATTG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|351017168|gb|FQ424595.1|FQ424595
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|351017430|gb|FQ435783.1|FQ435783
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|351017804|gb|FQ436157.1|FQ436157
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|349827569|gb|FQ422437.1|FQ422437
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|156725857|gb|EV229968.1|EV229968
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|349812437|gb|FQ407056.1|FQ407056
EST:     ACAAGATCACGCAACTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGACAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAA
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|351037015|gb|FQ460725.1|FQ460725
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|110699436|gb|EE076435.1|EE076435
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|352786494|gb|FQ479103.1|FQ479103
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCT-ATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|294964049|gb|GW837852.1|GW837852
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|349824515|gb|FQ413182.1|FQ413182
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|351053908|gb|FQ441674.1|FQ441674
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|349825823|gb|FQ423118.1|FQ423118
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|352790114|gb|FQ481313.1|FQ481313
EST:     GCAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|351055242|gb|FQ440581.1|FQ440581
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGCTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|349809005|gb|FQ407454.1|FQ407454
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATTG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTACCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|349813553|gb|FQ413787.1|FQ413787
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|351024243|gb|FQ423666.1|FQ423666
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|349814982|gb|FQ410205.1|FQ410205
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|161715904|gb|FC065505.1|FC065505
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|351031621|gb|FQ459878.1|FQ459878
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|352794401|gb|FQ481632.1|FQ481632
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|30304254|gb|CB981048.1|CB981048
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|351013648|gb|FQ429789.1|FQ429789
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|71888991|gb|DT038046.1|DT038046
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|351021529|gb|FQ446073.1|FQ446073
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|161719520|gb|FC066431.1|FC066431
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|110382788|gb|EC947109.1|EC947109
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|349812407|gb|FQ406428.1|FQ406428
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|349810332|gb|FQ401778.1|FQ401778
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|351043642|gb|FQ451573.1|FQ451573
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|349830158|gb|FQ420418.1|FQ420418
EST:     ACAAGATCACGTAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|71869506|gb|DT018561.1|DT018561
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|352789722|gb|FQ476320.1|FQ476320
EST:     GCAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTT
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTT
EST: gi|34544506|gb|CF512738.1|CF512738
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|349824484|gb|FQ413151.1|FQ413151
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
EST: gi|71874115|gb|DT023170.1|DT023170
EST:     ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCG                         GCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG
genomic: ACAAGATCACGCAGCTGACTGATAATGTCTACTTGTGTCGTTCTGGATCGgtaatgcttt ... tcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattagtgacttatacattagtgtggcttccattcacaacattgttcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC
                                            ttcattttc  CT-rich tract
          ttatacatta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gacacattgtttgagtgaaataactaaattagtggaatacttgaaaattagtgacttatacattagtgtggcttccattcacaacattgttcattttcagGCGGCAGATTCTCAAATTTTATCTGATTATGTGCGTTACTATCTCCATCAGCACAC

- - - - - - - - gaaataa
- - - - - - - - - - - - - - - - -ggaatac
- - - - - - - - - - - - - - - - - - - - - -aaaatta