Sequence
atgc intronic sequence ATGC exonic sequence...ggaaatacccttcagagttgcaaaaaaaagttctagaaactggtgaaggaatgagtagaatcaacagtatttatttggttttcaatttctggctttatagGTTGAAGCTAATGATGCAGTAACAGTGGCTAGCATGACGAGGCCAAAGCCATTACCCAATGAAGTTCTTTCTGACCTTGGCGTGTCTGCTGCAACCAAGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g05020.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA17G12660.2 (Glycine max), 3'ss of exon 2
ggaaatacccttcagagttgcaaaaaaaagttctagaaactggtgaaggaatgagta---gaatcaacagtatttatttggttttcaatttctggctttatagGTTGAAGCTAATGATGCAGTAACAGTGGCTAGCATGACGAGGCCAAAGCCATTACCCAATGAAGTTCTTTCTGACCTTGGCGTGTCTGCTGCAACCAAGC
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--tgcagttgtttatagtgtaaatttgtaactgtgcaagttatgtgcagtctgagtgtctgacaatacagacatgatgttttgttcatattattgtttt-tagGTTGAAGCAAATGATGCAGTAACAGTGGCTAGCATGACAAGACCAAAACTATTACCAAATGAAGCTTTGTCTGACCTGGCTGTATCTGCAGCCACCAAGC
upper sequence: Vv11s0016g05020.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA05G08320.1 (Glycine max), 3'ss of exon 2
--ggaaatacccttcagagttgcaaaaaaaagttctagaaactggtgaaggaatgagtagaatcaacagtatttatttggttttcaatttctggctttatagGTTGAAGCTAATGATGCAGTAACAGTGGCTAGCATGACGAGGCCAAAGCCATTACCCAATGAAGTTCTTTCTGACCTTGGCGTGTCTGCTGCAACCAAGC
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tttttggtgtggtgcagttgtttatagtgtaaatct-gtaactgtgtaagttatgtgcagt-ttgacaatacttgatgctttgttcttattattgtttttagGTTGAAGCAAATGATGCAGTAACAGTGGCTAGCATGACAAGACCAAAACTATTACCAAATGAAGCTTTGTCTGACCTGGCTGTATCTGCAGCCACCAAGC
upper sequence: Vv11s0016g05020.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA14G01070.1 (Glycine max), 3'ss of exon 3
ggaaatacccttcagagttgcaaaaaaaagttctagaaactggtg-aaggaatgagtagaatcaacagtatttatttggttttcaatttctggc----tttatagGTTGAAGCTAATGATGCAGTAACAGTGGCTAGCATGACGAGGCCAAAGCCATTACCCAATGAAGTTCTTTCTGACCTTGGCGTGTCTGCTGCAACCAAGC
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----atttgattaagatttttcttgggtgttttttgtttatagtgtaagttatgtgcagtct-gacaatacagacatgatgttttgttcatattattgtttttagGTCGAAGCAAATGATGCGGTAACAGTGGCTAGCATGACAAGACCAAAACTATTACCAAATGAAGCTTTATCTGACCGGGCTGTATCTGCAGCCATCAAGC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aaggaatgagtagaatcaacagtatttatttggttttcaatttctggctttatagGTTGAAGCTAATGATGCAGTAACAGTGGCTAGCATGACGAGGCCAAAGCCATTACCCAATGAAGTTCTTTCTGACCTTGGCGTGTCTGCTGCAACCAAGC
tatttatttggttttc TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ggaaatacccttcagagttgcaaaaaaaagttctagaaactggtgaaggaatgagtagaatcaacagtatttatttggttttcaatttctggctttatagGTTGAAGCTAATGATGCAGTAACAGTGGCTAGCATGACGAGGCCAAAGCCATTACCCAATGAAGTTCTTTCTGACCTTGGCGTGTCTGCTGCAACCAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
ggaaata
- - - -cccttca
- - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - agaaact
- - - - - - - - - - - - - - - - - - - - - - gaaggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaatcaa