Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataactactttgaatgcccacaagcaatttctcttccaaattgtgagtggaaatatgattgtcaacggttttatatatttcttgtgatgcttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATTGTTTTTCAG

Basic information

species Vitis vinifera
transcript Vv10s0003g01480.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G472625_T02 (Zea mays), 3'ss of exon 2
gtataactactttgaatgcccacaagcaatttctcttccaaattgtgagtggaaatatgattgtcaacggttttatatatttcttgtgatgcttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATTGTTTTTCAG
 |  || | |||      |       |     |    | |  |||| |         ||         | |  | | |  ||||| ||    | | ||||||||||||||||||||||||| ||||| |||||||| || |||||||| || || || |||
-tcgaattccttcctgctcagttgctctgacgcctgcctagtttgttaccctcttcgtgtcctcagttgctcatttgttcttcttctggccttaattgcagACCATCAGTTACATGGCAGAACGTGTCGTGGGTACGGGCTCATTTGGGATCGTCTTCCAG

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G045330_T02 (Zea mays), 3'ss of exon 2
gtataactactttgaatgcccacaagcaatttctcttccaaattgtgagtggaaatatgattgtcaacggttttatatat----ttcttgt---gatgcttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATTGTTTTTCAG
    |  |||| ||  ||     | || |     |||| | | |  |  | |    ||  | |||  | |||    |  |    ||||| |   |    | |  |||||||||||||||||||||||| ||||| ||||| || || |||||||| || || || |||
--tcagatactctgtctg-----atgccagcctacttctagagtccggttagcctcatc-tcgtcctcagttactcacgtgctgttcttattccggccttaatcgcagACCATCAGTTACATGGCAGAACGTGTCGTGGGCACAGGCTCATTTGGGATCGTCTTCCAG

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA15G09090.1 (Glycine max), 3'ss of exon 2
-----------gtataa-ctactttg--aatgc--ccacaagcaatttctcttccaaattgt--gagtggaaatatga---ttgtc--aacggttttatatatttcttgtgatgcttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATTGTTTTTCAG
           ||| |  | | | ||  |||    |  |     | || | | |    ||||   |  ||  ||||||   || ||    |   |||| || | |  |   ||  ||  || |||| || |||||||||||||| || ||||| || || || ||||||||||||||||| |||
gtattatatttgtaaattccattctgccaataatactgctcttgaattatttgctgggttgttaaaaaggccatatgacatttatcctggcaagttta-atgtcttgtacaatcattcttgtagACTATTAGTTACATGGCAGAACGGGTTGTAGGAACTGGATCATTTGGAATTGTTTTCCAG

upper sequence: Vv10s0003g01480.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA04G06760.1 (Glycine max), 3'ss of exon 2
--------------------------------gtataactactttgaatgcccacaagcaatttctcttccaaattgtgagtggaaatatgattgtcaacggttttatatatttcttgtgatgcttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATTGTTTTTCAG
                                 ||| |||  | |  |     |   ||    |   |   |||   | |    |  |||  | |    |   |||| || | |  |   ||| ||  || |||| || |||||||||||||| || ||||| || || || ||||||||||||||||| |||
gtatcatctttgtaaattccattatgctgataatattactcttatttaaaattatttgcttggttgttaaaaaagccttatgacatttatcctggattgcaagttta-atgtgttgtacaatgatttttgtagACTATTAGTTACATGGCAGAACGGGTTGTAGGAACTGGATCATTTGGAATTGTTTTCCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110712383|gb|EE089944.1|EE089944
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|30135526|gb|CB920864.1|CB920864
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|110711352|gb|EE087735.1|EE087735
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|71865182|gb|DT014237.1|DT014237
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|161713266|gb|FC063080.1|FC063080
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|110713972|gb|EE090359.1|EE090359
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|71863156|gb|DT012211.1|DT012211
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|71881193|gb|DT030248.1|DT030248
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|110713489|gb|EE089456.1|EE089456
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|71860238|gb|DT009293.1|DT009293
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|110729499|gb|EE105506.1|EE105506
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|110712650|gb|EE087882.1|EE087882
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|352794803|gb|FQ475298.1|FQ475298
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|30129470|gb|CB914809.1|CB914809
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|110711542|gb|EE088143.1|EE088143
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|71881129|gb|DT030184.1|DT030184
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|71855884|gb|DT004939.1|DT004939
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|110687697|gb|EE065401.1|EE065401
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|71888939|gb|DT037994.1|DT037994
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|71861754|gb|DT010809.1|DT010809
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|294966698|gb|GW839689.1|GW839689
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|110690114|gb|EE066940.1|EE066940
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|110711670|gb|EE088415.1|EE088415
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|71855247|gb|DT004302.1|DT004302
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|71864023|gb|DT013078.1|DT013078
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|110713041|gb|EE088616.1|EE088616
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|71865215|gb|DT014270.1|DT014270
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|110719262|gb|EE097039.1|EE097039
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|110712783|gb|EE088141.1|EE088141
EST:     GTCACACCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|110713002|gb|EE088542.1|EE088542
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|110713463|gb|EE089416.1|EE089416
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|110726198|gb|EE101771.1|EE101771
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|110712273|gb|EE089706.1|EE089706
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|110711844|gb|EE088789.1|EE088789
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|110699277|gb|EE076136.1|EE076136
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|71883493|gb|DT032548.1|DT032548
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|33405718|gb|CF211345.1|CF211345
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|110391404|gb|EC956378.1|EC956378
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|110713575|gb|EE089626.1|EE089626
EST:     GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: GTCACATCATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
EST: gi|110699260|gb|EE076105.1|EE076105
EST:     CATTTCCACCACCATTGGAGGGAAAAATGGGGAGCCCAAACAG                         ACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT
genomic: CATTTCCACCACAATTGGAGGGAAAAATGGGGAGCCCAAACAGgtataactac ... cttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagtggaaatatgattgtcaacggttttatatatttcttgtgatgcttactgcagACCATCAGTTACATGGCAGAGCGTGTTGTGGGTACCGGGTCATTTGGAATTGTTTTTCAG
                                           tgcttac  putative branch site (score: 2)
                        ttttatatatttcttg  TA-rich tract