1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgaatattttataatagagctagctaggttcgaatttttcagtgtcataatcttcaattttgcacttaaatagttatgtatgtatatatttttttcatagGTCCACCCATATGTAGCTACTGGGAACAAGAACTCCAAATTTGGTATTAGAAACGAGAAGCTGCAATGGTTTCTTGATGCTGTAAAGGCACATCCCAATG
species | Vitis vinifera |
transcript | Vv09s0070g00580.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCAAGAAGGTCAATGTTTTACTTAGGATCAATCCAGATGTGGATCCTCAG GTCCACCCATATGTAGCTACTGGGAACAAGAACTCCAAATTTGGTATTAGAEST: gi|161707427|gb|FC057354.1|FC057354
genomic: GCAAGAAGGTCAATGTTTTACTTAGGATCAATCCAGATGTGGATCCTCAGgtatgtgctg ... tttttcatagGTCCACCCATATGTAGCTACTGGGAACAAGAACTCCAAATTTGGTATTAGA
EST: CAAGAAGGTCAATGTTTTACTTAGGACTCA-TCCAGATGTGGATCCTCAG GTCCACCCATATGTAGCTACTGGGAACAAGAACTCCAAATTTGGTATTAGAEST: gi|351016766|gb|FQ424193.1|FQ424193
genomic: CAAGAAGGTCAATGTTTTACTTAGGA-TCAATCCAGATGTGGATCCTCAGgtatgtgctg ... tttttcatagGTCCACCCATATGTAGCTACTGGGAACAAGAACTCCAAATTTGGTATTAGA
EST: GCAAGAAGGTCAATGTTTTACTTAGGATCAATCCAGATGTGGATCCTCAG GTCCACCCATATGTAGCTACTGGGAACAAGAACTCCAAATTTGGTATTAGAEST: gi|349825530|gb|FQ419447.1|FQ419447
genomic: GCAAGAAGGTCAATGTTTTACTTAGGATCAATCCAGATGTGGATCCTCAGgtatgtgctg ... tttttcatagGTCCACCCATATGTAGCTACTGGGAACAAGAACTCCAAATTTGGTATTAGA
EST: GCAAGAAGGTCAATGTTTTACTTAGGATCAATCCAGATGTGGATCCTCAG GTCCACCCATATGTAGCTACTGGGAACAAGAACTCCAAATTTGGTATTAGAEST: gi|351012479|gb|FQ427080.1|FQ427080
genomic: GCAAGAAGGTCAATGTTTTACTTAGGATCAATCCAGATGTGGATCCTCAGgtatgtgctg ... tttttcatagGTCCACCCATATGTAGCTACTGGGAACAAGAACTCCAAATTTGGTATTAGA
EST: GCAAGAAGGTCAATGTTTTACTTAGGATCAATCCAGATGTGGATCCTCAG GTCCACCCATATGTAGCTACTGGGAACAAGAACTCCAAATTTGGTATTAGAEST: gi|161719613|gb|FC064546.1|FC064546
genomic: GCAAGAAGGTCAATGTTTTACTTAGGATCAATCCAGATGTGGATCCTCAGgtatgtgctg ... tttttcatagGTCCACCCATATGTAGCTACTGGGAACAAGAACTCCAAATTTGGTATTAGA
EST: GCAAGAAGGTCAATGTTTTACTTAGGATCAATCCAGATGTGGATCCTCAG GTCCACCCATATGTAGCTACTGGGAACAAGAACTCCAAATTTGGTATTAGA
genomic: GCAAGAAGGTCAATGTTTTACTTAGGATCAATCCAGATGTGGATCCTCAGgtatgtgctg ... tttttcatagGTCCACCCATATGTAGCTACTGGGAACAAGAACTCCAAATTTGGTATTAGA
cataatcttcaattttgcacttaaatagttatgtatgtatatatttttttcatagGTCCACCCATATGTAGCTACTGGGAACAAGAACTCCAAATTTGGTATTAGAAACGAGAAGCTGCAATGGTTTCTTGATGCTGTAAAGGCACATCCCAATG
tatttttttc CT-rich tract
acttaaatagttatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaatattttataatagagctagctaggttcgaatttttcagtgtcataatcttcaattttgcacttaaatagttatgtatgtatatatttttttcatagGTCCACCCATATGTAGCTACTGGGAACAAGAACTCCAAATTTGGTATTAGAAACGAGAAGCTGCAATGGTTTCTTGATGCTGTAAAGGCACATCCCAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - aatagag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtatgt