1 5' 3' | 2 5' 3' | 3 5' 3' |
...gaaaattttgtatttttttattttttatttgtgttgggcaaaggagaagaaaaaagggaggtgaaaggggaatcttgtaatgtgggtgagtttgtgatagGTGGGATCGCTGGCGGGCATCGCGGTGGGAGGCACTGTCATGCTCAATATTCTCATCGCCGG
species | Vitis vinifera |
transcript | Vv09s0070g00080.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
gaagaaaaaagggaggtgaaaggggaatcttgtaatgtgggtgagtttgtgatagGTGGGATCGCTGGCGGGCATCGCGGTGGGAGGCACTGTCATGCTCAATATTCTCATCGCCGG
ttgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaaattttgtatttttttattttttatttgtgttgggcaaaggagaagaaaaaagggaggtgaaaggggaatcttgtaatgtgggtgagtttgtgatagGTGGGATCGCTGGCGGGCATCGCGGTGGGAGGCACTGTCATGCTCAATATTCTCATCGCCGG
gaaaatt
- - - - - - - - - - - - - - - gtgttgg
- - - - - - - - - - - - - - - - - - - caaagga
- - - - - - - - - - - - - - - - - - - - - - - aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggggaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgggtg