Sequence
atgc intronic sequence ATGC exonic sequence...tgagccttttttgcaattagggaccagaaatttagctcccacttttcaccatctgaccttttttgttttcttttgtttctgcctaacatgtttattctagCCAACGAGCAGTCAGAACTGCATTATGGTGTAACTTCCTCGTCTTTTCTCTCAAGTTTGGGGTCTGGTTAACAACCTCTAGCCATGTTATGTTGGCTGAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0054g00220.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G23740.1 (Glycine max), 3'ss of exon 2
tgagccttttttgcaattagggaccagaaatttagctcccacttttcaccatctgaccttttttgttttcttttgtttctgcctaacatgtttattctagCCAACGAGCAGTCAGAACTGCATTATGGTGTAACTTCCTCGTCTTTTCTCTCAAGTTTGGGGTCTGGTTAACAACCTCTAGCCATGTTATGTTGGCTGAA
| || | ||||| || || ||| | | | | | | ||| ||||| ||| ||| || ||||| || | ||||||||| ||||||||||| || || ||||| ||||||||||| || |||||| | ||||||| ||||||||||| ||||||
--------------------------gtctcttttattttactttatttaatgcttccatttacctgcacctgattcttttccttgtatgtt-attgtagTCAGCGAGCTGTTAAAACTGCATTGTGGTGTAACTTTCTTGTTTTTTCACTCAAGTTTGGAGTATGGTTAGCTTCCTCTAGTCATGTTATGTTAGCTGAA
upper sequence: Vv09s0054g00220.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA07G02280.2 (Glycine max), 3'ss of exon 1
tgagccttttttgcaattagggaccagaaatttagctcccacttttcaccatctgaccttttttgttttcttttgtttctgcctaacatgtttattctagCCAACGAGCAGTCAGAACTGCATTATGGTGTAACTTCCTCGTCTTTTCTCTCAAGTTTGGGGTCTGGTTAACAACCTCTAGCCATGTTATGTTGGCTGAA
| || |||| || ||||| | | | | |||| | ||| | | | || | | |||| ||| ||| || ||||| || | |||||| || ||||||||||| || || ||||| ||||||||||| || |||||| | ||||||| ||||||||||| ||||||
---gtctcttttatttttc----------atttaatgcttccgcaacgcaatcttttccatttccctgcccctgattcttttcctcaatgt--attgtagTCAGCGAGCTGTTAAAACTGCCTTGTGGTGTAACTTTCTTGTTTTTTCACTCAAGTTTGGAGTATGGTTAGCTTCCTCTAGTCATGTTATGTTAGCTGAA
upper sequence: Vv09s0054g00220.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT1G51610.1 (Arabidopsis thaliana), 3'ss of exon 2
tgagccttttttgcaattagggaccagaaattt--agctcccacttttcaccat--ctgaccttttttgttttcttttgtttctgcctaacatgtttattct--agCCAACGAGCAGTCAGAACTGCATTATGGTGTAACTTCCTCGTCTTTTCTCTCAAGTTTGGGGTCTGGTTAACAACCTCTAGCCATGTTATGTTGGCTGAA
|| || | || | | | | | ||| | | | | || ||||| | ||| || | || | || ||| | || ||| |||| |||| |||||| ||||||| ||||||||||| ||||| |||||||||||||| |||| |||| ||||||||||| || ||||||||
------ttccatgtacttggtgtcttatcttgtgaagcccttgagctatatttttattgtgagtttttcctaacttctgagttatgctttcgtgaacattttgcagTCAAAGAGCTGTCACTACTGCACTATGGTGCAACTTCCTCGTGTTTTCACTCAAGTTTGGGGTTTGGTGGACAAGTTCTAGCCATGTCATAATGGCTGAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcaccatctgaccttttttgttttcttttgtttctgcctaacatgtttattctagCCAACGAGCAGTCAGAACTGCATTATGGTGTAACTTCCTCGTCTTTTCTCTCAAGTTTGGGGTCTGGTTAACAACCTCTAGCCATGTTATGTTGGCTGAA
gcctaac putative branch site (score: 2)
tttattct putative PPT
ttttttgttttctttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgagccttttttgcaattagggaccagaaatttagctcccacttttcaccatctgaccttttttgttttcttttgtttctgcctaacatgtttattctagCCAACGAGCAGTCAGAACTGCATTATGGTGTAACTTCCTCGTCTTTTCTCTCAAGTTTGGGGTCTGGTTAACAACCTCTAGCCATGTTATGTTGGCTGAA
- - - - ttttgca
- - - - - - - - - - - -ccagaaa
- - - - - - - - - - - - - - - - - - tcccact
- - - - - - - - - - - - - - - - - - - - - - - caccatc