1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ccattccttccccttaccccttgagacctgggtcaggtcttaaaggcttattatttttaaatatctaattacatttcttaataacattctttcccttcagGTTATCATCCAATCCATTGTAGCTTTAGCTCTCCAAGAATTGAAGGAACAGTACAGAGTTTCAACTTTTGTCTTTACTACCATCCAAAGCTGGGAGATGG
species | Vitis vinifera |
transcript | Vv09s0002g00280.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGATCGTATGGCTGAGACTGAGAGCCCCCAAATCCTGTGAATCGATCGAG GTTATCATCCAATCCATTGTAGCTTTAGCTCTCCAAGAATTGAAGGAACAGEST: gi|161715609|gb|FC068353.1|FC068353
genomic: CGATCGTATGGCTGAGACTGAGAGCCCCCAAATCCTGTGAATCGATCGAGgtaagccttc ... ttcccttcagGTTATCATCCAATCCATTGTAGCTTTAGCTCTCCAAGAATTGAAGGAACAG
EST: TGAGAGCCCCCAAATCCTGTGAATCGATCGAG GTTATCATCCAATCCATTGTAGCTTTAGCTCTCCAAGAATTGAAGGAACAGEST: gi|110730040|gb|EE106668.1|EE106668
genomic: TGAGAGCCCCCAAATCCTGTGAATCGATCGAGgtaagccttc ... ttcccttcagGTTATCATCCAATCCATTGTAGCTTTAGCTCTCCAAGAATTGAAGGAACAG
EST: CCCAAATCCTGTGAATCGATCGAG GTTATCATCCAATCCATTGTAGCTTTAGCTCTCCAAGAATTGAAGGAACAGEST: gi|294966722|gb|GW837741.1|GW837741
genomic: CCCAAATCCTGTGAATCGATCGAGgtaagccttc ... ttcccttcagGTTATCATCCAATCCATTGTAGCTTTAGCTCTCCAAGAATTGAAGGAACAG
EST: CGATCGTATGGCTGAGACTGAGAGCCCCCAAATCCTGTGAATCGATCGAG GTTATCATCCAATCCATTGTAGCTTTAGCTCTCCAAGAATTGAAGGAACAGEST: gi|26257010|gb|CA808073.1|CA808073
genomic: CGATCGTATGGCTGAGACTGAGAGCCCCCAAATCCTGTGAATCGATCGAGgtaagccttc ... ttcccttcagGTTATCATCCAATCCATTGTAGCTTTAGCTCTCCAAGAATTGAAGGAACAG
EST: CCCCCAAATCCTGTGAATCGATCGAG GTTATCATCCAACCCATTGTAGCTTTAGCTCTCCAAGAATTGAAGGAACAGEST: gi|110728958|gb|EE104982.1|EE104982
genomic: CCCCCAAATCCTGTGAATCGATCGAGgtaagccttc ... ttcccttcagGTTATCATCCAATCCATTGTAGCTTTAGCTCTCCAAGAATTGAAGGAACAG
EST: GCTGAGACTGAGAGCCCCCAAATCCTGTGAATCGATCGAG GTTATCATCCAATCCATTGTAGCTTTAGCTCTCCAAGAATTGAAGGAACAGEST: gi|110713617|gb|EE089696.1|EE089696
genomic: GCTGAGACTGAGAGCCCCCAAATCCTGTGAATCGATCGAGgtaagccttc ... ttcccttcagGTTATCATCCAATCCATTGTAGCTTTAGCTCTCCAAGAATTGAAGGAACAG
EST: CGATCGTATGGCTGAGACTGAGAGCCCCCAAATCCTGTGAATCGATCGAG GTTATCATCCAATCCATTGTAGCTTTAGCTCTCCAAGAATTGAAGGAACAGEST: gi|110726385|gb|EE102119.1|EE102119
genomic: CGATCGTATGGCTGAGACTGAGAGCCCCCAAATCCTGTGAATCGATCGAGgtaagccttc ... ttcccttcagGTTATCATCCAATCCATTGTAGCTTTAGCTCTCCAAGAATTGAAGGAACAG
EST: CTGAGAGCCCCCAAATCCTGTGAATCGATCGAG GTTATCATCCAATCCATTGTAGCTTTAGCTCTCCAAGAATTGAAGGAACAG
genomic: CTGAGAGCCCCCAAATCCTGTGAATCGATCGAGgtaagccttc ... ttcccttcagGTTATCATCCAATCCATTGTAGCTTTAGCTCTCCAAGAATTGAAGGAACAG
gcttattatttttaaatatctaattacatttcttaataacattctttcccttcagGTTATCATCCAATCCATTGTAGCTTTAGCTCTCCAAGAATTGAAGGAACAGTACAGAGTTTCAACTTTTGTCTTTACTACCATCCAAAGCTGGGAGATGG
taataac putative branch site (score: 1)
cattctttcccttc CT-rich tract
ttatttttaaatatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccattccttccccttaccccttgagacctgggtcaggtcttaaaggcttattatttttaaatatctaattacatttcttaataacattctttcccttcagGTTATCATCCAATCCATTGTAGCTTTAGCTCTCCAAGAATTGAAGGAACAGTACAGAGTTTCAACTTTTGTCTTTACTACCATCCAAAGCTGGGAGATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - -ccttccc
- - - - - - -ttacccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaca