1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tttaacgggagtagtatttattaaaagattttttccagagcaagagatctcaatctacttctgccataagacaataagtttggctatttttaacatgcagACCAAATATCGACTGTACCTTGTGCTGGATTTTGTAAATGGAGGTCACCTTTTCTTTCAGCTTTACAACCACGGTCTTTTCAG
species | Vitis vinifera |
transcript | Vv08s0058g01440.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TAACAAAAGTAGATCACCCCTTCATCGTCCAGCTCCGATACTCGTTTCAG ACCAAATATCGACTGTACCTTGTGCTGGATTTTGTAAATGGAGGTCACCTTEST: gi|37184429|gb|CF603783.1|CF603783
genomic: TAACAAAAGTAGATCACCCCTTCATCGTCCAGCTCCGATACTCGTTTCAGgtactttcta ... taacatgcagACCAAATATCGACTGTACCTTGTGCTGGATTTTGTAAATGGAGGTCACCTT
EST: TAACAAAAGTAGATCACCCCTTCATCGTCCAGCTCCGATACTCGTTTCAG ACCAAATATCGACTGTACCTTGTGCTGGATTTTGTAAATGGAGGTCACCTT
genomic: TAACAAAAGTAGATCACCCCTTCATCGTCCAGCTCCGATACTCGTTTCAGgtactttcta ... taacatgcagACCAAATATCGACTGTACCTTGTGCTGGATTTTGTAAATGGAGGTCACCTT
gatctcaatctacttctgccataagacaataagtttggctatttttaacatgcagACCAAATATCGACTGTACCTTGTGCTGGATTTTGTAAATGGAGGTCACCTTTTCTTTCAGCTTTACAACCACGGTCTTTTCAG
ttttaac putative branch site (score: 2)
ctattttt CT-rich tract
tatttttaacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttaacgggagtagtatttattaaaagattttttccagagcaagagatctcaatctacttctgccataagacaataagtttggctatttttaacatgcagACCAAATATCGACTGTACCTTGTGCTGGATTTTGTAAATGGAGGTCACCTTTTCTTTCAGCTTTACAACCACGGTCTTTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - aaaagat
- - - - - - - - - - - - - - - - - - - - caagaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggctat