Sequence
atgc intronic sequence ATGC exonic sequence...tgagtttttttattttgaaaatttaaatttagtgggaatggtaactcttaattaagctgtccttattagcgtccttgatataatttttgtctttgcacagATATGTTGGAGTTGGGAATGAGCCTTTCCTCTCATCCTACAATGGGTCATTCTTGAATATCACTCTCCCTGCACTGCAGAACATCCAAAATGCCCTCAAT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0007g07560.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA16G26860.1 (Glycine max), 3'ss of exon 1
---tgagtttttttattttgaaaatttaaattt--agtgggaatggtaactcttaattaagctgtccttattagcgtccttgatataatttttgtctttgcacagATATGTTGGAGTTGGGAATGAGCCTTTCCTCTCATCCTACAATGGGTCATTCTTGAATATCACTCTCCCTGCACTGCAGAACATCCAAAATGCCCTCAAT
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ggttttatattcggattccataagtaaaattttgcagttaaacctttctttcccaactaagtgattgttcattttgctctccatctg-----tattctttcacagGTATGTAGCAGTTGGGAACGAGCCATTTTTAAAATCCTACAATGGTTCATTCTTGAACATCACCCTCCCTGCATTACAGAACATTCAAAATGCCCTCAAT
upper sequence: Vv08s0007g07560.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA16G04680.1 (Glycine max), 3'ss of exon 1
tgagtttttttattttgaaaatttaaatttagtgggaatggtaactcttaattaagctgtccttat-tagcgtccttgata-taatttttgtctttgcacagATATGTTGGAGTTGGGAATGAGCCTTTCCTCTCATCCTACAATGGGTCATTCTTGAATATCACTCTCCCTGCACTGCAGAACATCCAAAATGCCCTCAAT
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-aatttatattttctttccctgccaaactctctttgt-tgatttccctcttttgaccaatttaaatgtagatttatgcatacttatctatattctcttgtagGTATGTAGCGGTCGGGAACGAGCCATTTTTAAAATCCTACAACAATTCATTCTTGAATATCACCCTCCCTGCACTGCAGAACATTCAAAATGCCCTTAAT
upper sequence: Vv08s0007g07560.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA02G07840.1 (Glycine max), 3'ss of exon 1
tgagtttttttattttgaaaattta-aatttagtgggaatggtaactctt--aattaagctgtccttattagcgtccttgatata-atttttgtctttgcacagATATGTTGGAGTTGGGAATGAGCCTTTCCTCTCATCCTACAATGGGTCATTCTTGAATATCACTCTCCCTGCACTGCAGAACATCCAAAATGCCCTCAAT
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----ttgttttatatatggattccataatttggagttaaatgtttctttccgaactaagtgattgttttattttgctttgccctccatctctattctttcacagGTATGTAGCAGTTGGGAACGAGCCATTTTTAAAATCCTACAATGGTTCATTCTTGAACATCACCCTCCCTGCATTACAGAACATTCAAAATGCACTCAATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|294964874|gb|GW838677.1|GW838677EST: GTTCGCAGAAACGTCACTCGTTACAATTTCAATGGAGGAGTTACAATCAA ATATGTTGGAGTTGGGAATGAGCCTTTCCTCTCATCCTACAATGGGTCATT
genomic: GTTCGCAGAAACGTCACTCGTTACAATTTCAATGGAGGAGTTACAATCAAgtatcttttt ... ctttgcacagATATGTTGGAGTTGGGAATGAGCCTTTCCTCTCATCCTACAATGGGTCATT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcttaattaagctgtccttattagcgtccttgatataatttttgtctttgcacagATATGTTGGAGTTGGGAATGAGCCTTTCCTCTCATCCTACAATGGGTCATTCTTGAATATCACTCTCCCTGCACTGCAGAACATCCAAAATGCCCTCAAT
gtccttgat putative branch site
tttttgtcttt putative PPT
atataatttttgtctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgagtttttttattttgaaaatttaaatttagtgggaatggtaactcttaattaagctgtccttattagcgtccttgatataatttttgtctttgcacagATATGTTGGAGTTGGGAATGAGCCTTTCCTCTCATCCTACAATGGGTCATTCTTGAATATCACTCTCCCTGCACTGCAGAACATCCAAAATGCCCTCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - gaaaatt
- - - - - - - - - - - - - - -tagtggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtccttg