1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gggctgtagtcccttttctttttttgtatccttctttgtgtccatttcagtcaggattggcagaggcatgtacttaagctcatatatcttcatgttgcagGCTTTTCACAGCAAACATGGGAAGGCTTATCTCTTTGATAAGGT
species | Vitis vinifera |
transcript | Vv08s0007g02170.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCAAGCATTGCAAGACCCATTTTGCGTATGCCAATCAAATTATTTCCAAG GCTTTTCACAGCAAACATGGGAAGGCTTATCTCTTTGATAAGGTEST: gi|110702227|gb|EE080703.1|EE080703
genomic: GCAAGCATTGCAAGACCCATTTTGCGTATGCCAATCAAATTATTTCCAAGgtttccccca ... catgttgcagGCTTTTCACAGCAAACATGGGAAGGCTTATCTCTTTGATAAGGT
EST: GCAAGCATTGCAAGACCCATTTTGCGTATGCCAATCAAATTATTTCCAAG GCTTTTCACAGCAAACATGGGAAGGCTTATCTCTTTGATAAGGTEST: gi|110390503|gb|EC955415.1|EC955415
genomic: GCAAGCATTGCAAGACCCATTTTGCGTATGCCAATCAAATTATTTCCAAGgtttccccca ... catgttgcagGCTTTTCACAGCAAACATGGGAAGGCTTATCTCTTTGATAAGGT
EST: GCAAGCATTGCAAGACCCATTTTGCGTATGCCAATCAAATTATTTCCAAG GCTTTTCACAGCAAACATGGGAAGGCTTATCTCTTTGATAAGGTEST: gi|77580160|gb|DV218980.1|DV218980
genomic: GCAAGCATTGCAAGACCCATTTTGCGTATGCCAATCAAATTATTTCCAAGgtttccccca ... catgttgcagGCTTTTCACAGCAAACATGGGAAGGCTTATCTCTTTGATAAGGT
EST: GCAAGCATTGCAAGACCCATTTTGCGTATGCCAATCAAATTATTTCCAAG GCTTTTCACAGCAAACATGGGAAGGCTTATCTCTTTGATAAGGTEST: gi|110424401|gb|EC990761.1|EC990761
genomic: GCAAGCATTGCAAGACCCATTTTGCGTATGCCAATCAAATTATTTCCAAGgtttccccca ... catgttgcagGCTTTTCACAGCAAACATGGGAAGGCTTATCTCTTTGATAAGGT
EST: GCAAGCATTGCAAGACCCATTTTGCGTATGCCAATCAAATTATTTCCAAG GCTTTTCACAGCAAACATGGGAAGGCTTATCTCTTTGATAAGGTEST: gi|110371533|gb|EC935633.1|EC935633
genomic: GCAAGCATTGCAAGACCCATTTTGCGTATGCCAATCAAATTATTTCCAAGgtttccccca ... catgttgcagGCTTTTCACAGCAAACATGGGAAGGCTTATCTCTTTGATAAGGT
EST: GCAAGCATTGCAAGACCCATTTTGCGTATGCCAATCAAATTATTTCCAAG GCTTTTCACAGCAAACATGGGAAGGCTTATCTCTTTGATAAGGTEST: gi|110391310|gb|EC956275.1|EC956275
genomic: GCAAGCATTGCAAGACCCATTTTGCGTATGCCAATCAAATTATTTCCAAGgtttccccca ... catgttgcagGCTTTTCACAGCAAACATGGGAAGGCTTATCTCTTTGATAAGGT
EST: GCAAGCATTGCAAGACCCATTTTGCGTATGCCAATCAAATTATTTCCAAG GCTTTTCACAGCAAACATGGGAAGGCTTATCTCTTTGATAAGGTEST: gi|110388162|gb|EC952881.1|EC952881
genomic: GCAAGCATTGCAAGACCCATTTTGCGTATGCCAATCAAATTATTTCCAAGgtttccccca ... catgttgcagGCTTTTCACAGCAAACATGGGAAGGCTTATCTCTTTGATAAGGT
EST: GCAAGCATTGCAAGACCCATTTTGCGTATGCCAATCAAATTATTTCCAAG GCTTTTCACAGCAAACATGGGAAGGCTTATCTCTTTGATAAGGT
genomic: GCAAGCATTGCAAGACCCATTTTGCGTATGCCAATCAAATTATTTCCAAGgtttccccca ... catgttgcagGCTTTTCACAGCAAACATGGGAAGGCTTATCTCTTTGATAAGGT
ttcagtcaggattggcagaggcatgtacttaagctcatatatcttcatgttgcagGCTTTTCACAGCAAACATGGGAAGGCTTATCTCTTTGATAAGGT
tatcttc CT-rich tract
atatatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggctgtagtcccttttctttttttgtatccttctttgtgtccatttcagtcaggattggcagaggcatgtacttaagctcatatatcttcatgttgcagGCTTTTCACAGCAAACATGGGAAGGCTTATCTCTTTGATAAGGT
gggctgt
- - - - - ccctttt
- - - - - - - - - - - - tgtatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - -ggattgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctcata