1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttctattagccatatccttagcactgcattccttgttgggaaggtctatcatcaatagtggcttttctaaaagaacaaatattttccttgtgttgtgcagGCTATGAGGTTTGGAAACCTTCCTGAGTGGGCAACTGAACTCTCTCATTCCATTCGTGAGGTGGTGCTTTTTAGTGATTATGTTTCTGAACACATGGACT
species | Vitis vinifera |
transcript | Vv07s0005g00160.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAGGATGGTTCAGTGAAGCCTCTCATAATCAG GCTATGAGGTTTGGAAACCTTCCTGAGTGGGCAACTGAACTCTCTCATTCCEST: gi|161712164|gb|FC061536.1|FC061536
genomic: AAGGATGGTTCAGTGAAGCCTCTCATAATCAGgtacaatgca ... tgttgtgcagGCTATGAGGTTTGGAAACCTTCCTGAGTGGGCAACTGAACTCTCTCATTCC
EST: AAGGATGGTTCAGTGAAGCCTCTCATAATCAG GCTATGAGGTTTGGAAACCTTCCTGAGTGGGCAACTGAACTCTCTCATTCCEST: gi|34544078|gb|CF512310.1|CF512310
genomic: AAGGATGGTTCAGTGAAGCCTCTCATAATCAGgtacaatgca ... tgttgtgcagGCTATGAGGTTTGGAAACCTTCCTGAGTGGGCAACTGAACTCTCTCATTCC
EST: AAGGATGGTTCAGTGAAGCCTCTCATAATCAG GCTATGAGGTTTGGAAACCTTCCTGAGTGGGCAACTGAACTCTCTCATTCCEST: gi|71871742|gb|DT020797.1|DT020797
genomic: AAGGATGGTTCAGTGAAGCCTCTCATAATCAGgtacaatgca ... tgttgtgcagGCTATGAGGTTTGGAAACCTTCCTGAGTGGGCAACTGAACTCTCTCATTCC
EST: AAGGATGGTTCAGTGAAGCCTCTCATAATCAG GCTATGAGGTTTGGAAACCTTCCTGAGTGGGCAACTGAACTCTCTCATTCC
genomic: AAGGATGGTTCAGTGAAGCCTCTCATAATCAGgtacaatgca ... tgttgtgcagGCTATGAGGTTTGGAAACCTTCCTGAGTGGGCAACTGAACTCTCTCATTCC
ctatcatcaatagtggcttttctaaaagaacaaatattttccttgtgttgtgcagGCTATGAGGTTTGGAAACCTTCCTGAGTGGGCAACTGAACTCTCTCATTCCATTCGTGAGGTGGTGCTTTTTAGTGATTATGTTTCTGAACACATGGACT
ttctaaa putative branch site (score: 2)
ttttccttgt putative PPT
ttttctaaaagaacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctattagccatatccttagcactgcattccttgttgggaaggtctatcatcaatagtggcttttctaaaagaacaaatattttccttgtgttgtgcagGCTATGAGGTTTGGAAACCTTCCTGAGTGGGCAACTGAACTCTCTCATTCCATTCGTGAGGTGGTGCTTTTTAGTGATTATGTTTCTGAACACATGGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - -ttagcca
- - - - - - - - - - -cactgca
- - - - - - - - - - - - - - ttccttg
- - - - - - - - - - - - - - - - - - - - - - - - tcatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggcttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagaa