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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggacaaaaatctgtcacaaatacacttattaagagcatagtaattgcagagtcatggactatgaagattaaccaataaaaattttgattttggcatgcagGATCTGATTGATGAGCTGGGTCTATACCTTGTGACATATGACAGAGCTGGGTACGGAGAAAGTGATCCAAACCCAAAGCGGTCAGTGAAGAGCGAAGCAT

Basic information

species Vitis vinifera
transcript Vv06s0080g00320.t01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|77582604|gb|DV220288.1|DV220288
EST:     TCGTTCATGGCTTTGATAGCTCCAAAGACATCTATTTGCCATTATCTCAG                         GATCTGATTGATGAGCTGGGTCTATACCTTGTGACATATGACAGAGCTGGG
genomic: TCGTTCATGGCTTTGATAGCTCCAAAGACATCTATTTGCCATTATCTCAGgtacacctct ... tggcatgcagGATCTGATTGATGAGCTGGGTCTATACCTTGTGACATATGACAGAGCTGGG
EST: gi|110700405|gb|EE078409.1|EE078409
EST:     GCTTTGATAGCTCCAAAGACATCTATTTGCCATTATCTCAG                         GATCTGATTGATGAGCTGGGTCTATACCTTGTGACATATGACAGAGCTGGG
genomic: GCTTTGATAGCTCCAAAGACATCTATTTGCCATTATCTCAGgtacacctct ... tggcatgcagGATCTGATTGATGAGCTGGGTCTATACCTTGTGACATATGACAGAGCTGGG
EST: gi|37187805|gb|CF607158.1|CF607158
EST:     TCGTTCATGGTTTTGATAGCTCCAAAGACATCTATTTGCCATTATCTCAG                         GATCTGATTGATGAGCTGGGTCTATACCTTGTGACATATGACAGAGCTGGG
genomic: TCGTTCATGGCTTTGATAGCTCCAAAGACATCTATTTGCCATTATCTCAGgtacacctct ... tggcatgcagGATCTGATTGATGAGCTGGGTCTATACCTTGTGACATATGACAGAGCTGGG
EST: gi|110700564|gb|EE078744.1|EE078744
EST:     TCGTTCATGGCTTTGATAGCTCCAAAGACATCTATTTGCCATTATCTCAG                         GATCTGATTGATGAGCTGGGTCTATACCTTGTGACATATGACAGAGCTGGG
genomic: TCGTTCATGGCTTTGATAGCTCCAAAGACATCTATTTGCCATTATCTCAGgtacacctct ... tggcatgcagGATCTGATTGATGAGCTGGGTCTATACCTTGTGACATATGACAGAGCTGGG
EST: gi|110700619|gb|EE077430.1|EE077430
EST:     GCTTTGATAGCTCCAAAGACATCTATTTGCCATTATCTCAG                         GATCTGATTGATGAGCTGGGTCTATACCTTGTGACATATGACAGAGCTGGG
genomic: GCTTTGATAGCTCCAAAGACATCTATTTGCCATTATCTCAGgtacacctct ... tggcatgcagGATCTGATTGATGAGCTGGGTCTATACCTTGTGACATATGACAGAGCTGGG
EST: gi|77579304|gb|DV218477.1|DV218477
EST:     TCGTTCATGGCTTTGATAGCTCCAAAGACATCTATTTGCCATTATCTCAG                         GATCTGATTGATGAGCTGGGTCTATACCTTGTGACATATGACAGAGCTGGG
genomic: TCGTTCATGGCTTTGATAGCTCCAAAGACATCTATTTGCCATTATCTCAGgtacacctct ... tggcatgcagGATCTGATTGATGAGCTGGGTCTATACCTTGTGACATATGACAGAGCTGGG
EST: gi|161713385|gb|FC063377.1|FC063377
EST:     TCGTTCATGGTTTTGATAGCTCCAAAGACATCTATTTGCCATTATCTCAG                         GATCTGATTGATGAGCTGGGTCTATACCTTGTGACATATGACAGAGCTGGG
genomic: TCGTTCATGGCTTTGATAGCTCCAAAGACATCTATTTGCCATTATCTCAGgtacacctct ... tggcatgcagGATCTGATTGATGAGCTGGGTCTATACCTTGTGACATATGACAGAGCTGGG
EST: gi|110686540|gb|EE064292.1|EE064292
EST:     TCGTTCATGGTTTTGATAGCTCCAAAGACATCTATTTGCCATTATCTCAG                         GATCTGATTGATGAGCTGGGTCTATACCTTGTGACATATGACAGAGCTGGG
genomic: TCGTTCATGGCTTTGATAGCTCCAAAGACATCTATTTGCCATTATCTCAGgtacacctct ... tggcatgcagGATCTGATTGATGAGCTGGGTCTATACCTTGTGACATATGACAGAGCTGGG
EST: gi|71856229|gb|DT005284.1|DT005284
EST:     TCGTTCATGGTTTTGATAGCTCCAAAGACATCTATTTGCCATTATCTCAG                         GATCTGATTGATGAGCTGGGTCTATACCTTGTGACATATGACAGAGCTGGG
genomic: TCGTTCATGGCTTTGATAGCTCCAAAGACATCTATTTGCCATTATCTCAGgtacacctct ... tggcatgcagGATCTGATTGATGAGCTGGGTCTATACCTTGTGACATATGACAGAGCTGGG
EST: gi|71865690|gb|DT014745.1|DT014745
EST:     TCGTTCATGGCTTTGATAGCTCCAAAGACATCTATTTGCCATTATCTCAG                         GATCTGATTGATGAGCTGGGTCTATACCTTGTGACATATGACAGAGCTGGG
genomic: TCGTTCATGGCTTTGATAGCTCCAAAGACATCTATTTGCCATTATCTCAGgtacacctct ... tggcatgcagGATCTGATTGATGAGCTGGGTCTATACCTTGTGACATATGACAGAGCTGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcagagtcatggactatgaagattaaccaataaaaattttgattttggcatgcagGATCTGATTGATGAGCTGGGTCTATACCTTGTGACATATGACAGAGCTGGGTACGGAGAAAGTGATCCAAACCCAAAGCGGTCAGTGAAGAGCGAAGCAT
                  aagattaaccaataaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ggacaaaaatctgtcacaaatacacttattaagagcatagtaattgcagagtcatggactatgaagattaaccaataaaaattttgattttggcatgcagGATCTGATTGATGAGCTGGGTCTATACCTTGTGACATATGACAGAGCTGGGTACGGAGAAAGTGATCCAAACCCAAAGCGGTCAGTGAAGAGCGAAGCAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- acaaaaa
- - - - - - - cacaaat
- - - - - - - - - - - - - - - - gagcata
- - - - - - - - - - - - - - - - - - - - - - - - - - catggac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaaa