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...ctatactgttttttctttcaaattcactgcattagtaaggacaaacagatagaaccgaattgtgtttcctctaatctattttctaattgggaacaagcagATCCGGGACCAAGCTCTTAGTAGGTTGAAGAGTAAAATTGAGCTTATGTTTGTAACCAATGGAAATAAGAAAGTGGTGGTGGTGCCTCATTCAATGGGAG
species | Vitis vinifera |
transcript | Vv06s0061g01110.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATTTGTATATGGCTGCTTATGATTGGAGACTCTCTTTCCAGAATACAGAG ATCCGGGACCAAGCTCTTAGTAGGTTGAAGAGTAAAATTGAGCTTATGTTTEST: gi|110721237|gb|EE098003.1|EE098003
genomic: ATTTGTATATGGCTGCTTATGATTGGAGACTCTCTTTCCAGAATACAGAGgtttcaagat ... gaacaagcagATCCGGGACCAAGCTCTTAGTAGGTTGAAGAGTAAAATTGAGCTTATGTTT
EST: TTTGTATATGGGCTGCT-ATGATTGGAGACTCTCTTTNCA-AATACAGAG ATCCGGGACCAAGCTCTTAGTEST: gi|71885957|gb|DT035012.1|DT035012
genomic: TTTGTATATGG-CTGCTTATGATTGGAGACTCTCTTTCCAGAATACAGAGgtttcaagat ... gaacaagcagATCCGGGACCAAGCTCTTAGT
EST: ATTTGTATATGGCTGCTTATGATTGGAGACTCTCTTTCCAGAATACAGAG ATCCGGGACCAAGCTCTTAGTAGGTTGAAGAGTAAAATTGAGCTTATGTTTEST: gi|71881733|gb|DT030788.1|DT030788
genomic: ATTTGTATATGGCTGCTTATGATTGGAGACTCTCTTTCCAGAATACAGAGgtttcaagat ... gaacaagcagATCCGGGACCAAGCTCTTAGTAGGTTGAAGAGTAAAATTGAGCTTATGTTT
EST: ATTTGTATATGGCTGCTTATGATTGGAGACTCTCTTTCCAGAATACAGAG ATCCGGGACCAAGCTCTTAGTAGGTTGAAGAGTAAAATTGAGCTTATGTTT
genomic: ATTTGTATATGGCTGCTTATGATTGGAGACTCTCTTTCCAGAATACAGAGgtttcaagat ... gaacaagcagATCCGGGACCAAGCTCTTAGTAGGTTGAAGAGTAAAATTGAGCTTATGTTT
cagatagaaccgaattgtgtttcctctaatctattttctaattgggaacaagcagATCCGGGACCAAGCTCTTAGTAGGTTGAAGAGTAAAATTGAGCTTATGTTTGTAACCAATGGAAATAAGAAAGTGGTGGTGGTGCCTCATTCAATGGGAG
ttctaat putative branch site (score: 2)
taatctattttctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctatactgttttttctttcaaattcactgcattagtaaggacaaacagatagaaccgaattgtgtttcctctaatctattttctaattgggaacaagcagATCCGGGACCAAGCTCTTAGTAGGTTGAAGAGTAAAATTGAGCTTATGTTTGTAACCAATGGAAATAAGAAAGTGGTGGTGGTGCCTCATTCAATGGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - cactgca
- - - - - - - - - - - - - - - - - - - ggacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - aaccgaa