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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgattatcaagtcttctttgttatgctctttaattttcaaccactccaattactccacacacatgtatgcagatagagaagaaatatttaaaatgatttaaactcacaaagagaaattggattaacagAATCGGAGCATGGGATATTCAATGCAATCTTACGCGGCCACATTGATTTTACAAGCGACCCATGGCCCACTATTTCATCTGGTGCCAAGGATCTTGTCAG

Basic information

species Vitis vinifera
transcript Vv06s0009g03150.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0009g03150.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA07G36000.1 (Glycine max), 3'ss of exon 2
gtgattatcaagtcttctttgttatgctctttaattttcaaccactccaattactccacacacatgtatgcagatagagaagaaatatttaaaatgatttaaactcacaaagagaaattggattaa-cagAATCGGAGCATGGGATATTCAATGCAATCTTACGCGGCCACATTGATTTTACAAGCGACCCATGGCCCACTATTTCATCTGGTGCCAAGGATCTTGTCAG
                      |        | ||||  |   |||| |||      | | | |    | |  | |   | |   |  || |||   || ||||| | |||    |||||| ||   ||||||| || ||||| ||||||||||| |||||| | || |||||||||||||||||||| ||||||||  | || ||   ||  || ||||||||||| ||
----------------------ttcagggactgatttgaattaactctaat------ataaataacacttctaaaatttatggtgtgcttgaaa--gttgaaactgaaaaaagtgaattggttttgtcagAATCCGAACATGGTATATTCAATGCCATCTTAAGAGGTCACATTGATTTTACAAGCGATCCATGGCCTTCAATATCCAATGCAGCAAAGGATCTTGTAAG

upper sequence: Vv06s0009g03150.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA20G08140.1 (Glycine max), 3'ss of exon 2
gtgattatcaagtcttctttgttatgctctttaattttcaaccactccaattactccacacacatgtatgcagatagagaagaaatatttaaaatgatttaaactcacaaagagaaattggattaacagAATCGGAGCATGGGATATTCAATGCAATCTTACGCGGCCACATTGATTTTACAAGCGACCCATGGCCCACTATTTCATCTGGTGCCAAGGATCTTGTCAG
                              |  || |  |   |     ||   |  | | | || ||     |        |||| | |    || || || || | |||    |||||| || |||||||| || ||||| ||||||||||| ||| || | |||||| |||||||||||||||| ||||||||  |  | ||   ||  || ||||||||||| ||
-----------------------------atatatatatatatatatatatatatatatatatatataaaacaactctcctaaaatttatggtgtgcttgaagctgaaaaaagtgaattggtttcacagAATCCGAACATGGTATATTCAATGCCATCCTAAGAGGCCACGTTGATTTTACAAGCGATCCATGGCCTTCATTGTCCAGTGCAGCAAAGGATCTTGTAAG

upper sequence: Vv06s0009g03150.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA02G44720.1 (Glycine max), 3'ss of exon 2
gtgattatcaagtcttctttgttatgctctttaattttcaaccactccaattact--ccacacacatgtatgcagatagagaagaaatatttaaaatgatttaaact----cacaaagagaaattggattaacagAATCGGAGCATGGGATATTCAATGCAATCTTACGCGGCCACATTGATTTTACAAGCGACCCATGGCCCACTATTTCATCTGGTGCCAAGGATCTTGTCAG
              ||  |  | ||   ||  ||| || || |      || ||   | | | | |  | | |  | |  || |  |||| |  |    || |||||    || ||    ||| ||| || |||||||| ||  |||||||||||||||||||| |||| |||||  |||| ||||||||||| ||||||||  | |||||| |||  || || |||||||| ||
-------------gtttgtattcatttactcaaatcttaaagctacttcataaccaacaaaatataattcttcttaaattgatggtatatctgcacaacttgaaactgaaccaaaacataaaaatggtttgacagAATCCGAAAATGGGATATTCAATGCAATCCTACGAGGCCATGTTGACTTTACAAGCGATCCATGGCCATCCATTTCACCTGCAGCAAAAGATCTTGTAAG

upper sequence: Vv06s0009g03150.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA14G04010.1 (Glycine max), 3'ss of exon 2
gtgattatcaagtcttctttgttatgctctttaattttcaa-ccactcc--aattactccacacacatgtatgcagatagagaagaaatatttaaaatgatttaaactcacaaagagaaat-tggattaacagAATCGGAGCATGGGATATTCAATGCAATCTTACGCGGCCACATTGATTTTACAAGCGACCCATGGCCCACTATTTCATCTGGTGCCAAGGATCTTGTCAG
               | | | ||    |  | ||| || || | ||| |  |||||  | | | | |  | | |  | |  || |  |||| |  |    || ||||| | |   | | || ||| || |||||||| ||  |||||||||||||||||||| |||| ||||| || || ||||||||||| ||||||||  | |||||  |||  || || |||||||| ||
--------------gtttgtattcatttactcaatcttaaagctacttcttaattaa-caaaatagaattcttcttaaattgatggtatatctgcacaatttgaaactgaaaccaaaacatatggtttgacagAATCAGAAAATGGGATATTCAATGCAATCCTACGAGGCCATATAGACTTTACAAGCGATCCATGGCCATCCATTTCCCCTGCAGCAAAAGATCTTGTAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagagaagaaatatttaaaatgatttaaactcacaaagagaaattggattaacagAATCGGAGCATGGGATATTCAATGCAATCTTACGCGGCCACATTGATTTTACAAGCGACCCATGGCCCACTATTTCATCTGGTGCCAAGGATCTTGTCAG
                           aactcac  putative branch site (score: 2)
        aaatatttaaaatgat  TA-rich tract