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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggcccagttatcatttatatatttatttttttcctatttgagcctttgaaatgtttctgtattttgggttgctaaattatagttctgtttcagGTAATGACCACAGAAATCTGGAGAAGTATGCAATACAAGGGATCAGAAATTATACGGGAGGTGGCTTGGGTAATTTTTGATGAGGTACATTATATGCGTG

Basic information

species Vitis vinifera
transcript Vv06s0009g01750.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv06s0009g01750.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G040995_T02 (Zea mays), 3'ss of exon 2
gtaggcccagttatcatttatatatttatttttttcctatttgagcctttgaaatgtttctgtattt-----tgggttgctaaattatagttctgt--ttcagGTAATGACCACAGAAATCTGGAGAAGTATGCAATACAAGGGATCAGAAATTATACGGGAGGTGGCTTGGGTAATTTTTGATGAGGTACATTATATGCGTG
                      || |   || |  |||     |  |||| || || || |  ||||     |||      |||  ||          | ||||| |||||||||||||| ||| | || ||||||||||||||||| ||  | ||  |||| || || ||||| || ||||||||||| ||||| ||||| |
---------------------gtactgccttctgccctcacc-actctttcaattgcttgtacatttatgcttggaacttaaaaccattccctgacaatgcagGTCATGACCACAGAAATTTGGCGGAGCATGCAATACAAGGGATCTGAGGTCATGAGGGAAGTTGCCTGGGTTATATTTGATGAGGTGCATTACATGCGGG

upper sequence: Vv06s0009g01750.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT1G59760.1 (Arabidopsis thaliana), 3'ss of exon 2
gtaggcccagttatcatttata-tatttatttttttcctatttgagcctttgaaatgtttctgtattttgggttgctaaattatagttctgtttcagGTAATGACCACAGAAATCTGGAGAAGTATGCAATACAAGGGATCAGAAATTATACGGGAGGTGGCTTGGGTAATTTTTGATGAGGTACATTATATGCGTG
        |  || | |||| | | || | | || ||  |   |   |||| |  || |  | | || |  |||  |   ||     | |||||||||| ||||| || || || | | | |||||||| || || || ||||| ||||| |||||||| || ||| | |||||||||||||| ||||| |||||||
------gtaagtaccttttaaactgttcaatgttgtctcagaagtttcttttatttgctatt-tgttcttagtt-ttgtgtt----ctttgtttcagGTCATGACTACGGAGATTTTGCGTAGTATGCAGTATAAAGGGTCAGAGATTATGCGGGAGGTTGCGTGGATTATTTTTGATGAGGTGCATTACATGCGTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagcctttgaaatgtttctgtattttgggttgctaaattatagttctgtttcagGTAATGACCACAGAAATCTGGAGAAGTATGCAATACAAGGGATCAGAAATTATACGGGAGGTGGCTTGGGTAATTTTTGATGAGGTACATTATATGCGTG
                               tgctaaa  putative branch site (score: 2)
                                            ttctgtttc  putative PPT
                                  taaattatagttct  TA-rich tract