1 5' 3' | 2 5' 3' | 3 5' 3' |
...ccatttagttctgtacttctgttaaatcatatgcaagcatgcattcactgtttgtaatttttttttttaaacttaaatggaaatgttgccccattgccagTGGGAAGGATACTGAGTTTCCGATTGAACCTGAGCTTACTCTGGAGCTGATGATGGCTGCTAACTATCTTCATACTTGAGGGGATCACTGTTTTTGCTTC
species | Vitis vinifera |
transcript | Vv06s0004g05560.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATTCTTGAGAAGATCTGCCAGTATTTCTACTGGTCTCTTCAATTTGCGAG TGGGAAGGATACTGAGTTTCCGATTGAACCTGAGCTTACTCTGGAGCTGATEST: gi|34319622|gb|CF372376.1|CF372376
genomic: ATTCTTGAGAAGATCTGCCAGTATTTCTACTGGTCTCTTCAATTTGCGAGgttctgattt ... ccattgccagTGGGAAGGATACTGAGTTTCCGATTGAACCTGAGCTTACTCTGGAGCTGAT
EST: ATTCTTGAGAAGATCTGCCAGTATTTCTACTGGTCTCTTCAATTTGCGAG TGGGAAGGATACTGAGTTTCCGATTGAACCTGAGCTTACTCTGGAGCTGATEST: gi|32457151|gb|CD798325.1|CD798325
genomic: ATTCTTGAGAAGATCTGCCAGTATTTCTACTGGTCTCTTCAATTTGCGAGgttctgattt ... ccattgccagTGGGAAGGATACTGAGTTTCCGATTGAACCTGAGCTTACTCTGGAGCTGAT
EST: ATTCTTGAGAAGATCTGCCAGTATTTCTACTGGTCTCTTCAATTTGCGAG TGGGAAGGATACTGAGTTTCCGATTGAATCTGAGCTTACTCTGGAGCTGATEST: gi|30326539|gb|CD009801.1|CD009801
genomic: ATTCTTGAGAAGATCTGCCAGTATTTCTACTGGTCTCTTCAATTTGCGAGgttctgattt ... ccattgccagTGGGAAGGATACTGAGTTTCCGATTGAACCTGAGCTTACTCTGGAGCTGAT
EST: ATTCTTGAGAAGATCTGCCAGTATTTCTACTGGTCTCTTCAATTTGCGAG TGGGAAGGATACTGAGTTTCCGATTGAACCTGAGCTTACTCTGGAGCTGATEST: gi|32456769|gb|CD797943.1|CD797943
genomic: ATTCTTGAGAAGATCTGCCAGTATTTCTACTGGTCTCTTCAATTTGCGAGgttctgattt ... ccattgccagTGGGAAGGATACTGAGTTTCCGATTGAACCTGAGCTTACTCTGGAGCTGAT
EST: TCTCTCCAATTTGCGAG TGGGAAGGATACTGAGTTTCCGATTGAACCTGAGCTTACTCTGGAGCTGATEST: gi|77582862|gb|DV220412.1|DV220412
genomic: TCTCTTCAATTTGCGAGgttctgattt ... ccattgccagTGGGAAGGATACTGAGTTTCCGATTGAACCTGAGCTTACTCTGGAGCTGAT
EST: ATTCTTGAGAAGATCTGCCAGTATTTCTACTGGTCTCTTCAATTTGCGAG TGGGAAGGATACTGAGTTTCCGATTGAACCTGAGCTTACTCTGGAGCTGATEST: gi|30134710|gb|CB920048.1|CB920048
genomic: ATTCTTGAGAAGATCTGCCAGTATTTCTACTGGTCTCTTCAATTTGCGAGgttctgattt ... ccattgccagTGGGAAGGATACTGAGTTTCCGATTGAACCTGAGCTTACTCTGGAGCTGAT
EST: ATTCTTGAGAAGATCTGCCAGTATTTCTACTGGTCTCTTCAATTTGCGAG TGGGAAGGATACTGAGTTTCCGATTGAACCTGAGCTTACTCTGGAGCTGATEST: gi|110401168|gb|EC967768.1|EC967768
genomic: ATTCTTGAGAAGATCTGCCAGTATTTCTACTGGTCTCTTCAATTTGCGAGgttctgattt ... ccattgccagTGGGAAGGATACTGAGTTTCCGATTGAACCTGAGCTTACTCTGGAGCTGAT
EST: ATTCTTGAGAAGATCTGCCAGTATTTCTACTGGTCTCTTCAATTTGCGAG TGGGAAGGATACTGAGTTTCCGATTGAACCTGAGCTTACTCTGGAGCTGATEST: gi|110421660|gb|EC987960.1|EC987960
genomic: ATTCTTGAGAAGATCTGCCAGTATTTCTACTGGTCTCTTCAATTTGCGAGgttctgattt ... ccattgccagTGGGAAGGATACTGAGTTTCCGATTGAACCTGAGCTTACTCTGGAGCTGAT
EST: ATTCTTGAGAAGATCTGCCAGTATTTCTACTGGTCTCTTCAATTTGCGAG TGGGAAGGATACTGAGTTTCCGATTGAACCTGAGCTTACTCTGGAGCTGATEST: gi|30330192|gb|CD013454.1|CD013454
genomic: ATTCTTGAGAAGATCTGCCAGTATTTCTACTGGTCTCTTCAATTTGCGAGgttctgattt ... ccattgccagTGGGAAGGATACTGAGTTTCCGATTGAACCTGAGCTTACTCTGGAGCTGAT
EST: ATTCTTGAGAAGATCTGCCAGTATTTCTACTGGTCTCTTCAATTTGCGAG TGGGAAGGATACTGAGTTTCCGATTGAACCTGAGCTTACTCTGGAGCTGATEST: gi|110413425|gb|EC979210.1|EC979210
genomic: ATTCTTGAGAAGATCTGCCAGTATTTCTACTGGTCTCTTCAATTTGCGAGgttctgattt ... ccattgccagTGGGAAGGATACTGAGTTTCCGATTGAACCTGAGCTTACTCTGGAGCTGAT
EST: GAGAAGATCTGCCAGTATTTCTACTGGTCTCTTCAATTTGCGAG TGGGAAGGATACTGAGTTTCCGATTGAACCTGAGCTTACTCTGGAGCTGATEST: gi|22015221|gb|BQ800255.1|BQ800255
genomic: GAGAAGATCTGCCAGTATTTCTACTGGTCTCTTCAATTTGCGAGgttctgattt ... ccattgccagTGGGAAGGATACTGAGTTTCCGATTGAACCTGAGCTTACTCTGGAGCTGAT
EST: TCAATTTGCGAG TGGGAAGGATACTGAGTTTCCGATTGAACCTGAGCTTACTCTGGAGCTGATEST: gi|110418444|gb|EC984601.1|EC984601
genomic: TCAATTTGCGAGgttctgattt ... ccattgccagTGGGAAGGATACTGAGTTTCCGATTGAACCTGAGCTTACTCTGGAGCTGAT
EST: ATTCTTGAGAAGATCTGCCAGTATTTCTACTGGTCTCTTCAATTTGCGAG TGGGAAGGATACTGAGTTTCCGATTGAACCTGAGCTTACTCTGGAGCTGATEST: gi|32271968|gb|CD721127.1|CD721127
genomic: ATTCTTGAGAAGATCTGCCAGTATTTCTACTGGTCTCTTCAATTTGCGAGgttctgattt ... ccattgccagTGGGAAGGATACTGAGTTTCCGATTGAACCTGAGCTTACTCTGGAGCTGAT
EST: ATTCTTGAGAAGATCTGCCAGTATTTCTACTGGTCTCTTCAATTTGCGAG TGGGAAGGATACTGAGTTTCCGATTGAACCTGAGCTTACTCTGGAGCTGATEST: gi|110408935|gb|EC974583.1|EC974583
genomic: ATTCTTGAGAAGATCTGCCAGTATTTCTACTGGTCTCTTCAATTTGCGAGgttctgattt ... ccattgccagTGGGAAGGATACTGAGTTTCCGATTGAACCTGAGCTTACTCTGGAGCTGAT
EST: ATTCTTGAGAAGATCTGCCAGTATTTCTACTGGTCTCTTCAATTTGCGAG TGGGAAGGATACTGAGTTTCCGATTGAACCTGAGCTTACTCTGGAGCTGATEST: gi|77578008|gb|DV217766.1|DV217766
genomic: ATTCTTGAGAAGATCTGCCAGTATTTCTACTGGTCTCTTCAATTTGCGAGgttctgattt ... ccattgccagTGGGAAGGATACTGAGTTTCCGATTGAACCTGAGCTTACTCTGGAGCTGAT
EST: ATTCTTGAGAAGATCTGCCAGTATTTCTACTGGTCTCTTCAATTTGCGAG TGGGAAGGATACTGAGTTTCCGATTGAACCTGAGCTTACTCTGGAGCTGATEST: gi|110392803|gb|EC957238.1|EC957238
genomic: ATTCTTGAGAAGATCTGCCAGTATTTCTACTGGTCTCTTCAATTTGCGAGgttctgattt ... ccattgccagTGGGAAGGATACTGAGTTTCCGATTGAACCTGAGCTTACTCTGGAGCTGAT
EST: ATTCTTGAGAAGATCTGCCAGTATTTCTACTGGTCTCTTCAATTTGCGAG TGGGAAGGATACTGAGTTTCCGATTGAACCTGAGCTTACTCTGGAGCTGATEST: gi|110371311|gb|EC935227.1|EC935227
genomic: ATTCTTGAGAAGATCTGCCAGTATTTCTACTGGTCTCTTCAATTTGCGAGgttctgattt ... ccattgccagTGGGAAGGATACTGAGTTTCCGATTGAACCTGAGCTTACTCTGGAGCTGAT
EST: ATTCTTGAGAAGATCTGCCAGTATTTCTACTGGTCTCTTCAATTTGCGAG TGGGAAGGATACTGAGTTTCCGATTGAACCTGAGCTTACTCTGGAGCTGATEST: gi|71861463|gb|DT010518.1|DT010518
genomic: ATTCTTGAGAAGATCTGCCAGTATTTCTACTGGTCTCTTCAATTTGCGAGgttctgattt ... ccattgccagTGGGAAGGATACTGAGTTTCCGATTGAACCTGAGCTTACTCTGGAGCTGAT
EST: ATTCTTGAGAAGATCTGCCAGTATTTCTACTGGTCTCTTCAATTTGCGAG TGGGAAGGATACTGAGTTTCCGATTGAACCTGAGCTTACTCTGGAGCTGATEST: gi|110701302|gb|EE078715.1|EE078715
genomic: ATTCTTGAGAAGATCTGCCAGTATTTCTACTGGTCTCTTCAATTTGCGAGgttctgattt ... ccattgccagTGGGAAGGATACTGAGTTTCCGATTGAACCTGAGCTTACTCTGGAGCTGAT
EST: ATTCTTGAGAAGATCTGCCAGTATTTCTACTGGTCTCTTCAATTTGCGAG TGGGAAGGATACTGAGTTTCCGATTGAACCTGAGCTTACTCTGGAGCTGATEST: gi|22010533|gb|BQ795567.1|BQ795567
genomic: ATTCTTGAGAAGATCTGCCAGTATTTCTACTGGTCTCTTCAATTTGCGAGgttctgattt ... ccattgccagTGGGAAGGATACTGAGTTTCCGATTGAACCTGAGCTTACTCTGGAGCTGAT
EST: ATTCTTGAGAAGATCTGCCAGTATTTCTACTGGTCTCTTCAATTTGCGAG TGGGAAGGATACTGAGTTTCCGATTGAACCTGAGCTTACTCTGGAGCTGAT
genomic: ATTCTTGAGAAGATCTGCCAGTATTTCTACTGGTCTCTTCAATTTGCGAGgttctgattt ... ccattgccagTGGGAAGGATACTGAGTTTCCGATTGAACCTGAGCTTACTCTGGAGCTGAT
cactgtttgtaatttttttttttaaacttaaatggaaatgttgccccattgccagTGGGAAGGATACTGAGTTTCCGATTGAACCTGAGCTTACTCTGGAGCTGATGATGGCTGCTAACTATCTTCATACTTGAGGGGATCACTGTTTTTGCTTC
ttgcccc CT-rich tract
tttgtaattttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccatttagttctgtacttctgttaaatcatatgcaagcatgcattcactgtttgtaatttttttttttaaacttaaatggaaatgttgccccattgccagTGGGAAGGATACTGAGTTTCCGATTGAACCTGAGCTTACTCTGGAGCTGATGATGGCTGCTAACTATCTTCATACTTGAGGGGATCACTGTTTTTGCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
ccattta
- - - - - - - -cttctgt
- - - - - - - - - - - - - -catatgc
- - - - - - - - - - - - - - - - - - gcatgca
- - - - - - - - - - - - - - - - - - - - - - - -ctgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgcc