Sequence
atgc intronic sequence ATGC exonic sequence...ccaagcattctcaatggattatggcagccctacttttataattttaagtttatttccctttctacattgtgtttatgtaaaattcattgcttctttgaagGTATTGGCATCTCAAAAGCGATTGGAAAATAAATATAAAGCGGCACAACAAGCTTCTGAAGATTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0094g00150.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G017077_T01 (Zea mays), 3'ss of exon 3
ccaagcattctcaatggattatggcagccctacttttataattttaagtttatttcccttt--ctacattgtgtttatgtaaaattcattgcttctttga-agGTATTGGCATCTCAAAAGCGATTGGAAAATAAATATAAAGCGGCACAACAAGCTTCTGAAGATTG
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-tttgcttcctct-tacatcata-tgcttctactcttttgtttcatctcttatgcttgtgaaacgaaactttgatgctattttatggattcttgttttggtagGTCTTGGCATCTCAAAAGCGGCTTGAGAATAAATATAAAGCTGCAGAACAAGCTTCTGCTGATTG
upper sequence: Vv05s0094g00150.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA12G05330.1 (Glycine max), 3'ss of exon 3
-ccaagcattctcaatggattatggcagccctacttttataattttaagtttatttccctttctacattgtgtttatgtaaaattcattgcttctttg--aagGTATTGGCATCTCAAAAGCGATTGGAAAATAAATATAAAGCGGCACAACAAGCTTCTGAAGATTG
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gctatataaactgactccaaagaag-attcgtagtttcctc-tattaatgctatctcttgttcaattttatttttat-tgaacttttttgtttctttcttgagGTATTGGCATCTCAAAAGCGATTGGAAAATAAATACAAAGCTGCACAACAAGCTTCTGAAGAGTG
upper sequence: Vv05s0094g00150.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA11G13300.1 (Glycine max), 3'ss of exon 3
-ccaagcattctcaatggattatggcagccctactttta--taattttaagttt-atttccctttctacattgtgtttatgtaaaattcattgcttctttgaagGTATTGGCATCTCAAAAGCGATTGGAAAATAAATATAAAGCGGCACAACAAGCTTCTGAAGATTG
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tatatggattatgattatacacaaactatttagctgtaaactgacttcaaaaaggattgttagttcaactttattttcattgaacaatttttgtcttc----agGTGTTGGCATCTCAAAAGCGGTTGGAAAATAAATACAAGGCTGCACAACAAGCTTCTGAAGAGTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aagtttatttccctttctacattgtgtttatgtaaaattcattgcttctttgaagGTATTGGCATCTCAAAAGCGATTGGAAAATAAATATAAAGCGGCACAACAAGCTTCTGAAGATTG
ttcattgcttcttt CT-rich tract
tttatgtaaaattcat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ccaagcattctcaatggattatggcagccctacttttataattttaagtttatttccctttctacattgtgtttatgtaaaattcattgcttctttgaagGTATTGGCATCTCAAAAGCGATTGGAAAATAAATATAAAGCGGCACAACAAGCTTCTGAAGATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
ccaagca
- - - - -ctcaatg
- - - - - - - - - -tatggca
- - - - - - - - - - - - - gccctac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaattc