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...atttttttataggtaggatttaatttatattcattgctatggttcatatttcaatgttccatttgatagaaaactatgccgttttccattctttgtatagGATTATGGAAAATGTCCAATTACAGGGGAGCCACTAACTATGGACGATATTGTTCCAATACAAACAGGAAAG
species | Vitis vinifera |
transcript | Vv05s0049g01840.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGAAATCTGGGCTTCTCTTCGAGAAACGTTTGATCGAGAGACACGTATCG GATTATGGAAAATGTCCAATTACAGGGGAGCCACTAACTATGGACGATATTEST: gi|71858292|gb|DT007347.1|DT007347
genomic: AGAAATCTGGGCTTCTCTTCGAGAAACGTTTGATCGAGAGACACATATCGgtattcttca ... ctttgtatagGATTATGGAAAATGTCCAATTACAGGGGAGCCACTAACTATGGACGATATT
EST: AGAAATCTGGGCTTCTCTTCGAGAAACGTTTGATCGAGAGACACGTATCG GATTATGGAAAATGTCCAATTACAGGGGAGCCACTAACTATGGACGATATTEST: gi|161710544|gb|FC058133.1|FC058133
genomic: AGAAATCTGGGCTTCTCTTCGAGAAACGTTTGATCGAGAGACACATATCGgtattcttca ... ctttgtatagGATTATGGAAAATGTCCAATTACAGGGGAGCCACTAACTATGGACGATATT
EST: AGAAATCTGGGCTTCTCTTCGAGAAACGTTTGATCGAGAGACACGTATCG GATTATGGAAAATGTCCAATTACAGGGGAGCCACTAACTATGGACGATATTEST: gi|110687481|gb|EE064937.1|EE064937
genomic: AGAAATCTGGGCTTCTCTTCGAGAAACGTTTGATCGAGAGACACATATCGgtattcttca ... ctttgtatagGATTATGGAAAATGTCCAATTACAGGGGAGCCACTAACTATGGACGATATT
EST: AGAAATCTGGGCTTCTCTTCGAGAAACGTTTGATCGAGAGACACGTATCG GATTATGGAAAATGTCCAATTACAGGGGAGCCACTAACTATGGACGATATT
genomic: AGAAATCTGGGCTTCTCTTCGAGAAACGTTTGATCGAGAGACACATATCGgtattcttca ... ctttgtatagGATTATGGAAAATGTCCAATTACAGGGGAGCCACTAACTATGGACGATATT
atatttcaatgttccatttgatagaaaactatgccgttttccattctttgtatagGATTATGGAAAATGTCCAATTACAGGGGAGCCACTAACTATGGACGATATTGTTCCAATACAAACAGGAAAG
atttgat putative branch site (score: 5)
ccgttttccattcttt putative PPT
atttgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttttttataggtaggatttaatttatattcattgctatggttcatatttcaatgttccatttgatagaaaactatgccgttttccattctttgtatagGATTATGGAAAATGTCCAATTACAGGGGAGCCACTAACTATGGACGATATTGTTCCAATACAAACAGGAAAG
- - - - - - - - - - - - - - - -cattgct
- - - - - - - - - - - - - - - - - - - - - - - - - -caatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaacta