1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtcggttgggtttgtgttaatattccattaccgatgttccttttttttttttcccctgcttttaggattttgagttttatataaagggagatgtggatttagTTTTCTTGTAGCAATGGGGGACATGTCTTTGAGGAAGACTGGAGTGGAGGAGAAGAGGGCTAAAGTGCAGAAGGAGTCCAAAATTCTTCTTGATTACACC
species | Vitis vinifera |
transcript | Vv05s0049g01470.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTTGCGAATGTGGCAAATTTGTTGAATACAAGAGATGCTGAATTGAGTAG TTT-CTTGTAACCATGGGG-ACATGTCTTEST: gi|349812735|gb|FQ409894.1|FQ409894
genomic: CTTGCGAATGTGGCAAATTTGTTGAATACAAGAGATACTGAATTGAGTAGgtcggttggg ... gtggatttagTTTTCTTGTAGCAATGGGGGACATGTCTT
EST: CTTGCGAATGTGGCAAATTTGTTGAATACAAGAGATACTGAATTGAGTAG TTTTCTTGTAGCAATGGGGGACATGTCTTTGAGGAAGACTGGAGTGGAGGAEST: gi|349815651|gb|FQ400807.1|FQ400807
genomic: CTTGCGAATGTGGCAAATTTGTTGAATACAAGAGATACTGAATTGAGTAGgtcggttggg ... gtggatttagTTTTCTTGTAGCAATGGGGGACATGTCTTTGAGGAAGACTGGAGTGGAGGA
EST: CTTGCGAATGTGGCAAATTTGTTGAATACAAGAGATACTGAATTGAGTAG TTTTCTTGTAGCAATGGGGGACATGTCTTTGAGGAAGACTGGAGTGGAGGAEST: gi|351044677|gb|FQ443208.1|FQ443208
genomic: CTTGCGAATGTGGCAAATTTGTTGAATACAAGAGATACTGAATTGAGTAGgtcggttggg ... gtggatttagTTTTCTTGTAGCAATGGGGGACATGTCTTTGAGGAAGACTGGAGTGGAGGA
EST: CTTGCGAATGTGGCAAATTTGTTGAATACAAGAGATACTGAATTGAGTAG TTTTCTTGTAGCAATGGGGGACATGTCTTTGAGGAAGACTGGAGTGGAGGAEST: gi|349812781|gb|FQ410423.1|FQ410423
genomic: CTTGCGAATGTGGCAAATTTGTTGAATACAAGAGATACTGAATTGAGTAGgtcggttggg ... gtggatttagTTTTCTTGTAGCAATGGGGGACATGTCTTTGAGGAAGACTGGAGTGGAGGA
EST: CTTGCGAATGTGGCAAATTTGTTGAATACAAGAGATACTGAATTGAGTAG TTTTCTTGTAGCAATGGGGGACATGTCTTTGAGGAAGACTGGAGTGGAGGAEST: gi|110718784|gb|EE096009.1|EE096009
genomic: CTTGCGAATGTGGCAAATTTGTTGAATACAAGAGATACTGAATTGAGTAGgtcggttggg ... gtggatttagTTTTCTTGTAGCAATGGGGGACATGTCTTTGAGGAAGACTGGAGTGGAGGA
EST: CTTGCGAATGTGGCAAATTTGTTGAATACAAGAGATACTGAATTGAGTAG TTTTCTTGTAGCAATGGGGGACATGTCTTTGAAGAAGACTGGAGTGGAGGAEST: gi|161713410|gb|FC063390.1|FC063390
genomic: CTTGCGAATGTGGCAAATTTGTTGAATACAAGAGATACTGAATTGAGTAGgtcggttggg ... gtggatttagTTTTCTTGTAGCAATGGGGGACATGTCTTTGAGGAAGACTGGAGTGGAGGA
EST: CTTGCGAATGTGGCAAATTTGTTGAATACAAGAGATACTGAATTGAGTAG TTTTCTTGTAGCAATGGGGGACATGTCTTTGAGGAAGACTGGAGTGGAGGAEST: gi|110730524|gb|EE107704.1|EE107704
genomic: CTTGCGAATGTGGCAAATTTGTTGAATACAAGAGATACTGAATTGAGTAGgtcggttggg ... gtggatttagTTTTCTTGTAGCAATGGGGGACATGTCTTTGAGGAAGACTGGAGTGGAGGA
EST: CTTGCGAATGTGGCAAATTTGTTGAATACAAGAGATACTGAATTGAGTAG TTTTCTTGTAGCAATGGGGGACATGTCTTTGAAGAAGACTGGAGTGGANGAEST: gi|351044047|gb|FQ452720.1|FQ452720
genomic: CTTGCGAATGTGGCAAATTTGTTGAATACAAGAGATACTGAATTGAGTAGgtcggttggg ... gtggatttagTTTTCTTGTAGCAATGGGGGACATGTCTTTGAGGAAGACTGGAGTGGAGGA
EST: CTTGCGAATGTGGCAAATTTGTTGAATACAAGAGATACTGAATTGAGTAG TTTTCTTGTAGCAATGGGGGACATGTCTTTGAGGAAGACTGGAGTGGAGGAEST: gi|110687005|gb|EE064039.1|EE064039
genomic: CTTGCGAATGTGGCAAATTTGTTGAATACAAGAGATACTGAATTGAGTAGgtcggttggg ... gtggatttagTTTTCTTGTAGCAATGGGGGACATGTCTTTGAGGAAGACTGGAGTGGAGGA
EST: CTTGCGAATGTGGCAAATTTGTTGAATACAAGAGATACTGAATTGAGTAG TTTTCTTGTAGCAATGGGGGACATGTCTTTGAGGAAGACTGGAGTGGAGGAEST: gi|351032507|gb|FQ458872.1|FQ458872
genomic: CTTGCGAATGTGGCAAATTTGTTGAATACAAGAGATACTGAATTGAGTAGgtcggttggg ... gtggatttagTTTTCTTGTAGCAATGGGGGACATGTCTTTGAGGAAGACTGGAGTGGAGGA
EST: CTTGCGAATGTGGCAAATTTGTTGAATACAAGAGATACTGAATTGAGTAG TTTTCTTGTAGCAATGGGGGACATGTCTTTGAGGAAGACTGGAGTGGAGGA
genomic: CTTGCGAATGTGGCAAATTTGTTGAATACAAGAGATACTGAATTGAGTAGgtcggttggg ... gtggatttagTTTTCTTGTAGCAATGGGGGACATGTCTTTGAGGAAGACTGGAGTGGAGGA
tttttcccctgcttttaggattttgagttttatataaagggagatgtggatttagTTTTCTTGTAGCAATGGGGGACATGTCTTTGAGGAAGACTGGAGTGGAGGAGAAGAGGGCTAAAGTGCAGAAGGAGTCCAAAATTCTTCTTGATTACACC
attttgagttttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcggttgggtttgtgttaatattccattaccgatgttccttttttttttttcccctgcttttaggattttgagttttatataaagggagatgtggatttagTTTTCTTGTAGCAATGGGGGACATGTCTTTGAGGAAGACTGGAGTGGAGGAGAAGAGGGCTAAAGTGCAGAAGGAGTCCAAAATTCTTCTTGATTACACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG