1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gaaagaatatttgaaattttaatttcttttcttctatcacattttatcagcgaccaaagagaggtcagatgtttgttgacttttggttgggttgtaacagGCCAAATCAGAGCTGAAGAGATCTGCTGTCGCAGATAATGTGTCAGGGAAGAGCAGGCTCAGCGAAGTTAGGACTAGCTCCGGGATGTTTATCGGAAAGG
species | Vitis vinifera |
transcript | Vv05s0020g02220.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTACGAAGGTTTTCTTTCGGAAGAAGAATGCGATCATTTGATATCTCTT GCCAAATCAGAGCTGAAGAGATCTGCTGTCGCAGATAATGTGTCAGGGAAGEST: gi|161708931|gb|FC060474.1|FC060474
genomic: TGTACGAGGGTTTTCTTTCGGAAGAAGAATGCGATCATTTGATATCTCTTgtgagttgaa ... gttgtaacagGCCAAATCAGAGCTGAAGAGATCTGCTGTCGCAGATAATGTGTCAGGGAAG
EST: TGTACGAGGGTTTTCTTTCGGAAGAAGAATGCGATCATTTGATATCTCTT GCCAAATCAGAGCTGAAGAGGTCTGCTGTCGCAGATAATGTGTCAGGGAAG
genomic: TGTACGAGGGTTTTCTTTCGGAAGAAGAATGCGATCATTTGATATCTCTTgtgagttgaa ... gttgtaacagGCCAAATCAGAGCTGAAGAGATCTGCTGTCGCAGATAATGTGTCAGGGAAG
atcagcgaccaaagagaggtcagatgtttgttgacttttggttgggttgtaacagGCCAAATCAGAGCTGAAGAGATCTGCTGTCGCAGATAATGTGTCAGGGAAGAGCAGGCTCAGCGAAGTTAGGACTAGCTCCGGGATGTTTATCGGAAAGG
tgttgac putative branch site (score: 3)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaagaatatttgaaattttaatttcttttcttctatcacattttatcagcgaccaaagagaggtcagatgtttgttgacttttggttgggttgtaacagGCCAAATCAGAGCTGAAGAGATCTGCTGTCGCAGATAATGTGTCAGGGAAGAGCAGGCTCAGCGAAGTTAGGACTAGCTCCGGGATGTTTATCGGAAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
gaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - -gaccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggttgg