Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110705827|gb|EE083121.1|EE083121EST: CCTCCGGCACCACCAGTGCCCTTCCTGGAAGCCTCAGCCTGTTCACACGA GAAATGGACAGCTCCAGAGTACAAATGCTACTGGAAGGTGGTGAACCCAGA
genomic: CCTCCAGCACCACCAGTGCCCTTCCTGGAAGCCTCAGCCTGTTCACACGAgtaagtcaag ... ctttttccagGATATGGACAGCTCCAGAGTACAAATGCTACTGGAAGGTGGTGAACCCAGA
EST:
gi|110731604|gb|EE106171.1|EE106171EST: CCTCCGGCACCACCAGTGCCCTTCCTGGAAGCCTCAGCCTGTTCACACGA GAAATGGACAGCTCCAGAGTACAAATGCTACTGGAAGGTGGTGAACCCAGA
genomic: CCTCCAGCACCACCAGTGCCCTTCCTGGAAGCCTCAGCCTGTTCACACGAgtaagtcaag ... ctttttccagGATATGGACAGCTCCAGAGTACAAATGCTACTGGAAGGTGGTGAACCCAGA
EST:
gi|110730197|gb|EE107001.1|EE107001EST: CCTCCGGCACCACCAGTGCCCTTCCTGGAAGCCTCAGCCTGTTCACACGA GAAATGGACAGCTCCAGAGTACAAATGCTACTGGAAGGTGGTGAACCCAGA
genomic: CCTCCAGCACCACCAGTGCCCTTCCTGGAAGCCTCAGCCTGTTCACACGAgtaagtcaag ... ctttttccagGATATGGACAGCTCCAGAGTACAAATGCTACTGGAAGGTGGTGAACCCAGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcaaatatagtccatatcctctgtttcctattactaaatggttgtctttttccagGATATGGACAGCTCCAGAGTACAAATGCTACTGGAAGGTGGTGAACCCAGATATGAAAGTAGCATCTGTGTTTGGACTGCTAGCAGCACAGAAGTATGGG
tactaaa putative branch site (score: 1)
ttgtctttttcc putative PPT
tattactaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtcaaggaaattacgaagaacttcccatagaagaacactgaaactttcaaatatagtccatatcctctgtttcctattactaaatggttgtctttttccagGATATGGACAGCTCCAGAGTACAAATGCTACTGGAAGGTGGTGAACCCAGATATGAAAGTAGCATCTGTGTTTGGACTGCTAGCAGCACAGAAGTATGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT