Sequence
atgc intronic sequence ATGC exonic sequencegtatctttcatacaggactgttggtctaacttcatatttgactgtccagATGTCTACATAGATGTTCCTGATATCATTGATATTAGTCACATGCGTAGCAAGGGCATTCAGCCTGGGGAAGGGCTATTACCAGAGGCTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv03s0017g00960.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA12G22240.1 (Glycine max), 3'ss of exon 14
------------------------gtatctttcatacaggactgttggtctaactt--catatttgactgtccagATGTCTACATAGATGTTCCTGATATCATTGATATTAGTCACATGCGTAGCAAGGGCATTCAGCCTGGGGAAGGGCTATTACCAGAGGCTG
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gtatgttatgtctttatatgcctattaacgttaaaaaggtattatatattttgttaagcatttttcttctttcagATGTGTACATTGATGTTCCTGATATCATAGATATCAGTCACATGCGCAGCAAAGGTCAGCAGTCTGGGGAAGAGCTATTACCTGATGGTG
upper sequence: Vv03s0017g00960.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA06G39770.1 (Glycine max), 3'ss of exon 14
-------------------------------------gtatctttcatacaggactgtt--ggtcta---actt-------catatttgactgtccagATGTCTACATAGATGTTCCTGATATCATTGATATTAGTCACATGCGTAGCAAGGGCATTCAGCCTGGGGAAGGGCTATTACCAGAGGCTG
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gtatgttttgtctttatatgcctattaatgttaaaaagtattatattttaaagatttttctgatctatatattttgttaagcatttttcttctttcagATGTGCACATTGATGTTCCTGATATCATAGATATCAGTCACATGCGCAGCAAAGGTCAGCAGTCTGGGGAAGAGCTATTACCTGATGGTG
upper sequence: Vv03s0017g00960.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT3G20630.1 (Arabidopsis thaliana), 3'ss of exon 15
------------------------------------------gtatctttcatacaggactgttggtc-taacttcatatttgactgtc-cagATGTCTACATAGATGTTCCTGATATCATTGATATTAGTCACATGCGTAGCAAGGGCATTCAGCCTGGGGAAGGGCTATTACCAGAGGCTG
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gtctctttctttctgaaacaatgatccttataatgttcccctattgtccctgtatataaatacttattatcctttcttgatttactgtggcagATGTATACATTGATGTTCCGGATGTTATTGATATCAGCCACATGCGTAGCAAAGGACTCCAACCTGGGGAAGAACTGTTGCCAGATGGCG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtatctttcatacaggactgttggtctaacttcatatttgactgtccagATGTCTACATAGATGTTCCTGATATCATTGATATTAGTCACATGCGTAGCAAGGGCATTCAGCCTGGGGAAGGGCTATTACCAGAGGCTG
ttcatattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatctttcatacaggactgttggtctaacttcatatttgactgtccagATGTCTACATAGATGTTCCTGATATCATTGATATTAGTCACATGCGTAGCAAGGGCATTCAGCCTGGGGAAGGGCTATTACCAGAGGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG