Sequence
atgc intronic sequence ATGC exonic sequence...cagaagtgccagttctatcagaatattcaaacagcaagcaccagtgtcttgcctttttaggacctttgaacacaatcttgaagttgattatattttgtagGTGAATTGCATTGTGTTTGACAAGACAGGGACCCTCACAGTTGGGAAGCCGGTAGTTGTTAACACAAGGCTCTTGAAAAATATGGCACTCCAAGAATTCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0025g03640.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GRMZM2G144083_T01 (Zea mays), 3'ss of exon 3
-------------------------cagaagtgccagttctatcagaatattcaaacagcaagcaccagtgtcttgcctttttaggacctttgaacacaatcttgaagttgattatattttgtagGTGAATTGCATTGTGTTTGACAAGACAGGGACCCTCACAGTTGGGAAGCCGGTAGTTGTTAACACAAGGCTCTTGAAAAATATGGCACTCCAAGAATTCT
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gtatgaaataatctcatctattgtgagggcgtgcaagtttttttcctttttaaaaaaggtcattga-attgttcagaaatgctaa-actatctcatatgccatggtacttggt---acttcgtagGTCGACTGCATCGTTTTTGACAAGACAGGGACGCTAACTATTGGGAAGCCTGTCGTTGTTGACACAAGGCTTCTCAAAAATATGGTCTTGCGTGAATTCT
upper sequence: Vv02s0025g03640.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA01G42800.1 (Glycine max), 3'ss of exon 3
----cagaagtgccagttc-tatcagaatattcaaacagcaagcaccagtgtcttgcctttttaggacctttgaacacaatcttgaagttgattatattttgtagGTGAATTGCATTGTGTTTGACAAGACAGGGACCCTCACAGTTGGGAAGCCGGTAGTTGTTAACACAAGGCTCTTGAAAAATATGGCACTCCAAGAATTCT
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cctacataaatttcactcaataacaaataatgtttagaa-aagaacatgtttctagcattcctcgtaatatcaaattca--ctcacaacttacgacatt--gcagGTGAATTGCATTGTGTTTGATAAGACAGGGACCCTCACAGTTGGGAAGCCAGTGGTTGTTACTACAAAACTCTTAAAAAAGACGTCACTTAGTAATTTCT
upper sequence: Vv02s0025g03640.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT1G63440.1 (Arabidopsis thaliana), 3'ss of exon 3
-----------------------------cagaagtgccagtt--ctat-cagaatattcaaacagcaagcac-cagtgtcttgcctttttaggacctttgaacacaatcttgaagttgattatattttgtagGTGAATTGCATTGTGTTTGACAAGACAGGGACCCTCACAGTTGGGAAGCCGGTAGTTGTTAACACAAGGCTCTTGAAAAATATGGCACTCCAAGAATTCT
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gttagtttagtgtgcagtaacttggtctatggctttgtaaacttactatactgtatatactttactcaggttctctggatcatttcttttctgaaatggtgaa----acctgacagtttcaatgacggtgtagGTAAATTGCATTGTCTTTGACAAGACAGGAACTCTCACGATGGGGAAGCCCGTTGTTGTGAAAACAAAGCTCCTGAAAAACATGGTACTTCGAGAGTTCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtcttgcctttttaggacctttgaacacaatcttgaagttgattatattttgtagGTGAATTGCATTGTGTTTGACAAGACAGGGACCCTCACAGTTGGGAAGCCGGTAGTTGTTAACACAAGGCTCTTGAAAAATATGGCACTCCAAGAATTCT
agttgat putative branch site (score: 5)
aagttgattatatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cagaagtgccagttctatcagaatattcaaacagcaagcaccagtgtcttgcctttttaggacctttgaacacaatcttgaagttgattatattttgtagGTGAATTGCATTGTGTTTGACAAGACAGGGACCCTCACAGTTGGGAAGCCGGTAGTTGTTAACACAAGGCTCTTGAAAAATATGGCACTCCAAGAATTCT
- - - - - - - - - - - - - tcaaaca
- - - - - - - - - - - - - - - - -gcaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacaatc