Sequence
atgc intronic sequence ATGC exonic sequence...tgcaactaaacaaattaggcacatgacaggaatatcttacattatgttgctatattttttccaaaatcagaaacaaaattatgccttgttgtctttccagGCTCATTAAAGAATTTGATAGAGAAGTTAAGGATTTGGAGATTAGAAATGATCCAGAAACCAACAAGATGCTGAATGAGAAAAAGCAATCAATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv02s0012g00140.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA17G15990.1 (Glycine max), 3'ss of exon 2
tgcaactaaacaa-attaggcacatgacaggaatatcttacattatgttgctatattttttccaaaatcagaaacaaaattatgccttg--ttgtctttccagGCTCATTAAAGAATTTGATAGAGAAGTTAAGGATTTGGAGATTAGAAATGATCCAGAAACCAACAAGATGCTGAATGAGAAAAAGCAATCAATG
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ttttcctgaacatcatttggcattggg--agcgtaccttggatt-tgaggtttttccgtcactgctaactcgagtgtgtgtgtggttggatctgattttgcagGCTTATTAAGGAGTTTGATAAAGAAGTCAAAACATTGGAGAGTAGCTTTGATAGAGAAACCAACAAAATGTTGAATGAGAAAAAGCAGTCAATG
upper sequence: Vv02s0012g00140.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA05G05710.1 (Glycine max), 3'ss of exon 2
tgcaactaaacaa-attaggcacatgacaggaatatcttacattatgttgctatattttttccaaaatcagaaacaaaattatgccttgttgtctttccagGCTCATTAAAGAATTTGATAGAGAAGTTAAGGATTTGGAGATTAGAAATGATCCAGAAACCAACAAGATGCTGAATGAGAAAAAGCAATCAATG
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tcttcctgaacagcatttggcattggaagcgtacctcggatttgaggtt-ttgccgtcactgctaactcgagtgtgtgtttggttggatctaattttgcagGCTTATTAAGGAGTTCGATAAAGAAGTCAAAACATTGGAGAATAGCTTTGATAGAGAAACCAACAAAATGTTGAATGAGAAAAAGCAGTCAATG
upper sequence: Vv02s0012g00140.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: PP1S211_37V6.1 (Physcomitrella patens), 3'ss of exon 2
tgcaactaaacaaattaggc-acatgacaggaatatctt--acattatgttgctatattttttccaaaatcagaaacaaaattatgc-cttgtt---gtctttccagGCTCATTAAAGAATTTGATAGAGAAGTTAAGGATTTGGAGATTAGAAATGATCCAGAAACCAACAAGATGCTGAATGAGAAAAAGCAATCAATG
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------cagacatcttcattgacgtgatgaagatgattacaacgttgttttgg-gcccttttttgtgcttctgtgataaaatggcgtacttgtctggggttctccagGTTGATTAAGGGTTTCGACAAAGTAATGAAGTATGAGGAAAGCCTAACAAATCTGGAATTTAACAAGATGCTGAATGAGAAAAAGCAATCACTG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttgctatattttttccaaaatcagaaacaaaattatgccttgttgtctttccagGCTCATTAAAGAATTTGATAGAGAAGTTAAGGATTTGGAGATTAGAAATGATCCAGAAACCAACAAGATGCTGAATGAGAAAAAGCAATCAATG
ccttgttgtctttcc CT-rich tract
tatattttttccaaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgcaactaaacaaattaggcacatgacaggaatatcttacattatgttgctatattttttccaaaatcagaaacaaaattatgccttgttgtctttccagGCTCATTAAAGAATTTGATAGAGAAGTTAAGGATTTGGAGATTAGAAATGATCCAGAAACCAACAAGATGCTGAATGAGAAAAAGCAATCAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
tgcaact
- - - -aaacaaa
- - - - - - - - - - acatgac
- - - - - - - - - - - - - -aggaata
- - - - - - - - - - - - - - - - - - - - - - tgttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgcct