Sequence
atgc intronic sequence ATGC exonic sequence...ctaacttaaaatgactacatgttgggatggtgggggcttggtggagacaaaatggaacaattatcattatcatttggcttctgaaaattctattttatagGATTTGCTTATGAGGATGACGTTGGACTCCATATGTAAGGTGGGATTTGGTGTAGAAATTGGGACTTTGGCTCCTAATCTACCAGAAAACTGCTTTGCTC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0026g02700.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA07G04840.1 (Glycine max), 3'ss of exon 2
ctaacttaaaatgactacatgttggga------tggtgggggcttggtggagacaaa---atggaacaattatcattatcatttg-gcttctgaaaattctattttatagGATTTGCTTATGAGGATGACGTTGGACTCCATATGTAAGGTGGGATTTGGTGTAGAAATTGGGACTTTGGCTCCTAATCTACCAGAAAACTGCTTTGCTC
| ||| || |||| | | | | | || | |||| ||| | ||| || ||| | | || |||| || ||| ||||| ||| | ||||| ||||| || ||||||||||||||||| |||||||| || |||||||| || |||||||| ||| ||||||| || |||||||||
gtgctacaaacattcttcatgcttataattttttttttcaagttttatttccacaagtctatgaagtaatggaggctagaattggtgacgcttcaaatgttaatttctagGAATTGTTGATGAGAATGACTTTAGACTCCATATGTAAGGTTGGATTTGGAGTGGAAATTGGAACATTGGCTCCCAATTTACCAGAGAATAGCTTTGCTC
upper sequence: Vv01s0026g02700.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA16G01420.1 (Glycine max), 3'ss of exon 4
------ctaac--ttaaaatgactacatgttgggat--ggtgggggcttggtggagacaaa---atggaacaattatcattatcatttg-gcttctgaaaattctattttatagGATTTGCTTATGAGGATGACGTTGGACTCCATATGTAAGGTGGGATTTGGTGTAGAAATTGGGACTTTGGCTCCTAATCTACCAGAAAACTGCTTTGCTC
| ||| | ||| ||||| || | | || | | || ||| | | | || ||| | | || |||| | ||| ||||| ||| | ||||| ||||| || ||||||||||||||||| |||||||| || |||||||| || |||||||| ||| ||||||| || ||| |||||
gtgctacaaacattcttcatgcttacatttttttttcaaatttaaattttatttcaataagtctatgaagtagtggaggctacaattggtgacacttcaaatgtcaatttctagGAATTGTTGATGAGAATGACTTTAGACTCCATATGTAAGGTTGGATTTGGAGTGGAAATTGGAACATTGGCTCCCAATTTACCAGAGAATAGCTATGCTC
upper sequence: Vv01s0026g02700.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: AT1G69500.1 (Arabidopsis thaliana), 3'ss of exon 2
ctaacttaaaatgactacatgttgggatggtgggggcttggtggagacaaaatggaacaattatcattatcatttggcttctgaaaattctattttatagGATTTGCTTATGAGGATGACGTTGGACTCCATATGTAAGGTGGGATTTGGTGTAGAAATTGGGACTTTGGCTCCTAATCTACCAGAAAACTGCTTTGCTC
|| | | | || ||| |||| | || || | || | | ||||| ||| | ||||| ||||| ||||| || |||||||| |||||||||||||| || || ||||| |||||||| | ||||||| || |||||||
-----------------------------gtaagaatctattaatcactaaagtctacaaacttagtttctcttacataacatcctttttttggctctagGAATTGTTGATGAGAATGACTTTGGATTCAATATGTAAAGTGGGATTTGGTGTGGAGATAGGGACATTGGCTCCAGAGTTACCAGAGAATCACTTTGCTA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gacaaaatggaacaattatcattatcatttggcttctgaaaattctattttatagGATTTGCTTATGAGGATGACGTTGGACTCCATATGTAAGGTGGGATTTGGTGTAGAAATTGGGACTTTGGCTCCTAATCTACCAGAAAACTGCTTTGCTC
ttctatttt CT-rich tract
ttctgaaaattctatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ctaacttaaaatgactacatgttgggatggtgggggcttggtggagacaaaatggaacaattatcattatcatttggcttctgaaaattctattttatagGATTTGCTTATGAGGATGACGTTGGACTCCATATGTAAGGTGGGATTTGGTGTAGAAATTGGGACTTTGGCTCCTAATCTACCAGAAAACTGCTTTGCTC
- - - -aaaatga
- - - - - - - ctacatg
- - - - - - - - - - - - - - ggtgggg
- - - - - - - - - - - - - - - - - - - tggtgga
- - - - - - - - - - - - - - - - - - - - - - -gacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - -ggaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaatt