Sequence
atgc intronic sequence ATGC exonic sequence...acatcctggactgcaagcgatgtttaattagcagaggaatcattacttaaaacttgctattaatcaaattttgatgtgttgttctcgtttatggatgtagACGGACAAAGCTTCACTGCTAGCAGAAGTGATACAGCATGTTAAAGAACTTAAACGACAGACATCTCTGATTGCAGAGTCTAGTCCGGTACCAACTGAAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g02940.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA20G32660.1 (Glycine max), 3'ss of exon 2
acatcctggactgcaagcgatgtttaattagcagagg--aatcattacttaaaacttgctattaatcaaattttgatgtgttg-ttctcgtttatggatgtagACGGACAAAGCTTCACTGCTAGCAGAAGTGATACAGCATGTTAAAGAACTTAAACGACAGACATCTCTGATTGCAGAGTCTAGTCCGGTACCAACTGAAA
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agccccaccacaatattttgtatacaattaattaatttcagtgctttatttaattttagtataatt---actttattgttttggttctttattttttttgtagACAGATAAAGCATCATTGCTAGCAGAAGTGATCCAGCATGTGAAGGAGCTGAAGCGTCAAACCTCTCTGATAGCAGAAACGAGTCCGGTTCCAACAGAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttaaaacttgctattaatcaaattttgatgtgttgttctcgtttatggatgtagACGGACAAAGCTTCACTGCTAGCAGAAGTGATACAGCATGTTAAAGAACTTAAACGACAGACATCTCTGATTGCAGAGTCTAGTCCGGTACCAACTGAAA
tattaatcaaattttg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
acatcctggactgcaagcgatgtttaattagcagaggaatcattacttaaaacttgctattaatcaaattttgatgtgttgttctcgtttatggatgtagACGGACAAAGCTTCACTGCTAGCAGAAGTGATACAGCATGTTAAAGAACTTAAACGACAGACATCTCTGATTGCAGAGTCTAGTCCGGTACCAACTGAAA
-catcctg
- - - - - - gcaagcg
- - - - - - - - - - - - - - - - agaggaa
- - - - - - - - - - - - - - - - - - - - - - -cttaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - cttgcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgtg