1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ctgggttctgttaaggtgtactatgcttcaatgttgaatccttttcttttcttttcttttctgtcctcttgtctttatcctggttttggttggctatcagGTTCCTCCAGAGGCTAGTAAAGCAAATGGAAACCATCTACTTGCTGATGATCGGAACAAATACAGGTCTATGTGGATCCGAGCACGCTCAACAGTCTGGA
species | Vitis vinifera |
transcript | Vv00s0598g00010.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCCTGCCAACACCTGCTGCACGTGTTCGGCAGCGTAAACGCTCAAATGAG GTTCCTCCAGAGGCTAGCAAAGCAAATGGAAACCATCTACTTGCTGATGATEST: gi|71864214|gb|DT013269.1|DT013269
genomic: CCCTGCCAACACCTGCTGCACGTGTTCGGCAGCGTAAACGCTCAAATGAGgttggttact ... tggctatcagGTTCCTCCAGAGGCTAGTAAAGCAAATGGAAACCATCTACTTGCTGATGAT
EST: CCCTGCCAACACCTGCTGCACGTGTTCGGCAGCGTAAACGCTCAAATGAG GTTCCTCCAGAGGCTAGCAAAGCAAATGGAAACCATCTACTTGCTGATGATEST: gi|37188422|gb|CF607771.1|CF607771
genomic: CCCTGCCAACACCTGCTGCACGTGTTCGGCAGCGTAAACGCTCAAATGAGgttggttact ... tggctatcagGTTCCTCCAGAGGCTAGTAAAGCAAATGGAAACCATCTACTTGCTGATGAT
EST: CCCTGCCAACACCTGCTGCACGTGTTCGGCAGCGTAAACGCTCAAATGAG GTTCCTCCAGAGGCTAGCAAAGCAAATGGAAACCATCTACTTGCTGATGATEST: gi|110722646|gb|EE099052.1|EE099052
genomic: CCCTGCCAACACCTGCTGCACGTGTTCGGCAGCGTAAACGCTCAAATGAGgttggttact ... tggctatcagGTTCCTCCAGAGGCTAGTAAAGCAAATGGAAACCATCTACTTGCTGATGAT
EST: CCCTGCCAACACCTGCTGCACGTGTTCGGCAGCGTAAACGCTCAAATGAG GTTCCTCCAGAGGCTAGTAAAGCAAATGGAAACCATCTACTTGCTGATGATEST: gi|71864173|gb|DT013228.1|DT013228
genomic: CCCTGCCAACACCTGCTGCACGTGTTCGGCAGCGTAAACGCTCAAATGAGgttggttact ... tggctatcagGTTCCTCCAGAGGCTAGTAAAGCAAATGGAAACCATCTACTTGCTGATGAT
EST: CCCTGCCAACACCTGCTGCACGTGTTCGGCAGCGTAAACGCTCAAATGAG GTTCCTCCAGAGGCTAGCAAAGCAAATGGAAACCATCTACTTGCTGATGATEST: gi|71864011|gb|DT013066.1|DT013066
genomic: CCCTGCCAACACCTGCTGCACGTGTTCGGCAGCGTAAACGCTCAAATGAGgttggttact ... tggctatcagGTTCCTCCAGAGGCTAGTAAAGCAAATGGAAACCATCTACTTGCTGATGAT
EST: CCCTGCCAACACCTGCTGCACGTGTTCGGCAGCGTAAACGCTCAAATGAG GTTCCTCCAGAGGCTAGCAAAGCAAATGGAAACCATCTACTTGCTGATGATEST: gi|32269792|gb|CD718951.1|CD718951
genomic: CCCTGCCAACACCTGCTGCACGTGTTCGGCAGCGTAAACGCTCAAATGAGgttggttact ... tggctatcagGTTCCTCCAGAGGCTAGTAAAGCAAATGGAAACCATCTACTTGCTGATGAT
EST: CCCTGCCAACACCTGCTGCACGTGTTCGGCAGCGTAAACGCTCAAATGAG GTTCCTCCAGAGGCTAGTAAAGCAAATGGAAACCATCTACTTGCTGATGAT
genomic: CCCTGCCAACACCTGCTGCACGTGTTCGGCAGCGTAAACGCTCAAATGAGgttggttact ... tggctatcagGTTCCTCCAGAGGCTAGTAAAGCAAATGGAAACCATCTACTTGCTGATGAT
cttttcttttcttttctgtcctcttgtctttatcctggttttggttggctatcagGTTCCTCCAGAGGCTAGTAAAGCAAATGGAAACCATCTACTTGCTGATGATCGGAACAAATACAGGTCTATGTGGATCCGAGCACGCTCAACAGTCTGGA
ttttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgggttctgttaaggtgtactatgcttcaatgttgaatccttttcttttcttttcttttctgtcctcttgtctttatcctggttttggttggctatcagGTTCCTCCAGAGGCTAGTAAAGCAAATGGAAACCATCTACTTGCTGATGATCGGAACAAATACAGGTCTATGTGGATCCGAGCACGCTCAACAGTCTGGA
- - - - - - - - - - ctatgct
- - - - - - - - - - - - - - caatgtt