1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaactgatcttcggcactggttgatggaaaaactccttttctttaaagtgctggattttgttattattccttactttctgtgctttccttggtttgcatttttaagCTGGGAACTTGCTTCAGCTCTAAAAGAATCAAAAGCAACATTTGATTCAGCTGGTGTGAAGCTAATTGCAGTTGGTGTTGGTACTCCTAACAAAGCTTGT
species | Vitis vinifera |
transcript | Vv00s0566g00010.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGAGTCGCTGTTGTTGCACTTCTGAGACATTTTGGGTGCTTTTGCTG CTGGGAACTTGCTTCAGCTCTAAAAGAATCAAAAGCAAGATTTGATTCAGCEST: gi|110425102|gb|EC991479.1|EC991479
genomic: GGAGTCGCTGTTGTTGCACTTCTGAGACATTTTGGGTGCTTTTGCTGgtaactgatc ... catttttaagCTGGGAACTTGCTTCAGCTCTAAAAGAATCAAAAGCAACATTTGATTCAGC
EST: GGAGTCGCTGTTGTTGCACTTCTGAGACATTTTGGGTGCTTTTGCTG CTGGGAACTTGCTTCAGCTCTAAAAGAATCAAAAGCAAGATTTGATTCAGCEST: gi|28966816|gb|CB345849.1|CB345849
genomic: GGAGTCGCTGTTGTTGCACTTCTGAGACATTTTGGGTGCTTTTGCTGgtaactgatc ... catttttaagCTGGGAACTTGCTTCAGCTCTAAAAGAATCAAAAGCAACATTTGATTCAGC
EST: GGAGTCGCTGTTGTTGCACTTCTGAGACATTTTGGGTGCTTTTGCTG CTGGGAACTTGCTTCAGCTCTAAAAGAATCAAAAGCAAGATTTGATTCAGCEST: gi|110718544|gb|EE095497.1|EE095497
genomic: GGAGTCGCTGTTGTTGCACTTCTGAGACATTTTGGGTGCTTTTGCTGgtaactgatc ... catttttaagCTGGGAACTTGCTTCAGCTCTAAAAGAATCAAAAGCAACATTTGATTCAGC
EST: GGAGTCGCTGTTGTTGCACTTCTGAGACATTTTGGGTGCTTTTGCTG CTGGGAACTTGCTTCAGCTCTAAAAGAATCAAAAGCAACATTTGATTCAGCEST: gi|29784715|gb|CB345795.2|CB345795
genomic: GGAGTCGCTGTTGTTGCACTTCTGAGACATTTTGGGTGCTTTTGCTGgtaactgatc ... catttttaagCTGGGAACTTGCTTCAGCTCTAAAAGAATCAAAAGCAACATTTGATTCAGC
EST: GGAGTCGCTGTTGTTGCACTTCTGAGACATTTTGGGTGCTTTTGCTG CTGGGAACTTGCTTCAGCTCTAAAAGAATCAAAAGCAAGATTTGATTCAGCEST: gi|110377599|gb|EC942676.1|EC942676
genomic: GGAGTCGCTGTTGTTGCACTTCTGAGACATTTTGGGTGCTTTTGCTGgtaactgatc ... catttttaagCTGGGAACTTGCTTCAGCTCTAAAAGAATCAAAAGCAACATTTGATTCAGC
EST: GGAGTCGCTGTTGTTGCACTTCTGAGACATTTTGGGTGCTTTTGCTG CTGGGAACTTGCTTCAGCTCTAAAAGAATCAAAAGCAAGATTTGATTCAGCEST: gi|110417869|gb|EC983965.1|EC983965
genomic: GGAGTCGCTGTTGTTGCACTTCTGAGACATTTTGGGTGCTTTTGCTGgtaactgatc ... catttttaagCTGGGAACTTGCTTCAGCTCTAAAAGAATCAAAAGCAACATTTGATTCAGC
EST: GGAGTCGCTGTTGTTGCACTTCTGAGACATTTTGGGTGCTTTTGCTG CTGGGAACTTGCTTCAGCTCTAAAAGAATCAAAAGCAAGATTTGATTCAGC
genomic: GGAGTCGCTGTTGTTGCACTTCTGAGACATTTTGGGTGCTTTTGCTGgtaactgatc ... catttttaagCTGGGAACTTGCTTCAGCTCTAAAAGAATCAAAAGCAACATTTGATTCAGC
tggattttgttattattccttactttctgtgctttccttggtttgcatttttaagCTGGGAACTTGCTTCAGCTCTAAAAGAATCAAAAGCAACATTTGATTCAGCTGGTGTGAAGCTAATTGCAGTTGGTGTTGGTACTCCTAACAAAGCTTGT
tccttac putative branch site (score: 2)
cattttt putative PPT
tttgttattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactgatcttcggcactggttgatggaaaaactccttttctttaaagtgctggattttgttattattccttactttctgtgctttccttggtttgcatttttaagCTGGGAACTTGCTTCAGCTCTAAAAGAATCAAAAGCAACATTTGATTCAGCTGGTGTGAAGCTAATTGCAGTTGGTGTTGGTACTCCTAACAAAGCTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC