1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttaatgttggatattcttctaatcggctgcacggttcacttttgatattgttgctatgaaaagaactgtttatcctctaaatcatatgttttcttttcagTTGTCATCTTGTGCTGGGGGAAGTTGAAGATGCACTACAATATTTCAGCAAGTGTTTAGAATCAGGGAGAATCGTGTGTTTGGATCGTAGGCTCATGATA
species | Vitis vinifera |
transcript | Vv00s0252g00060.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCAGCTGTGCTAGATCCCAACTTTCTCAAGGTTCAGATGAGGGCTGGAAA TTGTCATCTTGTGCTGGGGGAAGTTGAAGATGCACTACAATATTTCAGCAA
genomic: GCAGCTGTGCTAGATCCCAACTTTCTCAAGGTTCAGATGAGGGCTGGAAAgtaaggcctc ... ttcttttcagTTGTCATCTTGTGCTGGGGGAAGTTGAAGATGCACTACAATATTTCAGCAA
tattgttgctatgaaaagaactgtttatcctctaaatcatatgttttcttttcagTTGTCATCTTGTGCTGGGGGAAGTTGAAGATGCACTACAATATTTCAGCAAGTGTTTAGAATCAGGGAGAATCGTGTGTTTGGATCGTAGGCTCATGATA
ctctaaa putative branch site (score: 3)
tatgttttcttttc putative PPT
taaatcatatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaatgttggatattcttctaatcggctgcacggttcacttttgatattgttgctatgaaaagaactgtttatcctctaaatcatatgttttcttttcagTTGTCATCTTGTGCTGGGGGAAGTTGAAGATGCACTACAATATTTCAGCAAGTGTTTAGAATCAGGGAGAATCGTGTGTTTGGATCGTAGGCTCATGATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - tgttgga
- - - - - - - - - - - -cggctgc
- - - - - - - - - - - - - - - - - - - - - - - - tgttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatcat