1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtacactcaagaaaattaagtatacataatatgcacagatatgaatgtatttatttagttctttgatgtacgcagGGAGTGATGAATAAGACTGTTGATCTACATCGGAGCATAGCCGCGAAG
species | Vitis vinifera |
transcript | Vv00s0250g00020.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAAGCTTCAATTGCCACGGAAGAAAGGCTATTTGCTCTGTTCACACTCTG GGAGTGATGAATAGGACTGCTGATCTACATCGGAGCATAGCCGCGAAGEST: gi|71860017|gb|DT009072.1|DT009072
genomic: AAAGCTTCAATTGCCACGGAAGAAAGGCTATTTGCTCTGTTCACAATCTGgtacactcaa ... atgtacgcagGGAGTGATGAATAAGACTGTTGATCTACATCGGAGCATAGCCGCGAAG
EST: AAAGCTTCAATTGCCACGGAAGAAAGGCTATTTGCTCTGTTCACACTCTG GGAGTGATGAATAAGACTGCTGATCTACATCGGAGCATAGCCGCGAAGEST: gi|110731715|gb|EE106367.1|EE106367
genomic: AAAGCTTCAATTGCCACGGAAGAAAGGCTATTTGCTCTGTTCACAATCTGgtacactcaa ... atgtacgcagGGAGTGATGAATAAGACTGTTGATCTACATCGGAGCATAGCCGCGAAG
EST: AAAGCTTCAATTGCCACGGAAGAAAGGCTATTTGCTCTGTTCACAATCTG GGAGTGATGAATAAGACTGCTGATCTACATCGGAGCATAGCCGCGAAGEST: gi|110725728|gb|EE102561.1|EE102561
genomic: AAAGCTTCAATTGCCACGGAAGAAAGGCTATTTGCTCTGTTCACAATCTGgtacactcaa ... atgtacgcagGGAGTGATGAATAAGACTGTTGATCTACATCGGAGCATAGCCGCGAAG
EST: AAAGCTTCAATTGCCACGGAAGAAAGGCTATTTGCTCTGTTCACAATCTG GGAGTGATGAATAAGACTGCTGATCTACATCGGAGCATAGCCGCGAAGEST: gi|110719002|gb|EE096483.1|EE096483
genomic: AAAGCTTCAATTGCCACGGAAGAAAGGCTATTTGCTCTGTTCACAATCTGgtacactcaa ... atgtacgcagGGAGTGATGAATAAGACTGTTGATCTACATCGGAGCATAGCCGCGAAG
EST: AAAGCTTCAATTGCCACGGAAGAAAGGCTATTTGCTCTGTTCACACTCTG GGAGTGATGAATAAGACTGCTGATCTACATCGGAGCATAGCCGCGAAGEST: gi|71858350|gb|DT007405.1|DT007405
genomic: AAAGCTTCAATTGCCACGGAAGAAAGGCTATTTGCTCTGTTCACAATCTGgtacactcaa ... atgtacgcagGGAGTGATGAATAAGACTGTTGATCTACATCGGAGCATAGCCGCGAAG
EST: AAAGCTTCAATTGCCACGGAAGAAAGGCTATTTGCTCTGTTCACACTCTG GGAGTGATGAATAAGACTGCTGATCTACATCGGAGCATAGCCGCGAAGEST: gi|110723499|gb|EE100881.1|EE100881
genomic: AAAGCTTCAATTGCCACGGAAGAAAGGCTATTTGCTCTGTTCACAATCTGgtacactcaa ... atgtacgcagGGAGTGATGAATAAGACTGTTGATCTACATCGGAGCATAGCCGCGAAG
EST: AAAGCTTCAATTGCCACGGAAGAAAGGCTATTTGCTCTGTTCACAATCTG GGAGTGATGAATAAGACTGCTGATCTACATCGGAGCATAGCCGCGAAG
genomic: AAAGCTTCAATTGCCACGGAAGAAAGGCTATTTGCTCTGTTCACAATCTGgtacactcaa ... atgtacgcagGGAGTGATGAATAAGACTGTTGATCTACATCGGAGCATAGCCGCGAAG
tatacataatatgcacagatatgaatgtatttatttagttctttgatgtacgcagGGAGTGATGAATAAGACTGTTGATCTACATCGGAGCATAGCCGCGAAG
ctttgat putative branch site (score: 5)
atatgaatgtatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacactcaagaaaattaagtatacataatatgcacagatatgaatgtatttatttagttctttgatgtacgcagGGAGTGATGAATAAGACTGTTGATCTACATCGGAGCATAGCCGCGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA