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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtaaatcttgcatggatggaatttctttggggaagaaaatcacatatggcatatgcacatctgattcacctttttacaaattctgttttacagAACAAATGCAATGTGGGCTATGCTTTTGTCAACATGATTGGTCCTCTTCATATTGTTCCATTACATCAG

Basic information

species Vitis vinifera
transcript Vv00s0239g00110.t01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0239g00110.t01 (Vitis vinifera), 3'ss of exon 2
lower sequence: GLYMA08G28860.1 (Glycine max), 3'ss of exon 4
------gtaagtaaatcttgcatggatggaatttctttggggaagaaaatcacatatggcatatgcacatctgattcacctttttacaaattctgttttacagAACAAATGCAATGTGGGCTATGCTTTTGTCAACATGATTGGTCCTCTTCATATTGTTCCATTACATCAG
       | | | ||  || |    ||| |||||  ||         | ||   | |    | ||   |  | |||||| |     | |  |   ||   |||||||||||||||||||| ||||| ||  ||||||||||   ||||      ||| | |||||  |||||
gttccttttattgaacatttccactatgaaatttaatttactttagtattcctttctcctttttgtttaatt-attcacatggaatcgacattaatt--gcagAACAAATGCAATGTGGGATATGCATTCATCAACATGATCAATCCTGGCTTGATTATACCATTCTATCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcacatatggcatatgcacatctgattcacctttttacaaattctgttttacagAACAAATGCAATGTGGGCTATGCTTTTGTCAACATGATTGGTCCTCTTCATATTGTTCCATTACATCAG
                    atctgat  putative branch site (score: 4)
                                          ttctgtttt  putative PPT
                                tttttacaaattct  TA-rich tract