1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gcttctttttccccatatgttatggaatggtgaaaacagtttgctgtttctgaaacacccttttttttgtttgtttttctgtttgaattcctttgtgaagCTTCCCTGACAGGAAAGGATGATAGCGCAGCAAAGTCAAAGAGGGGAAGGAAAGTTCAGTTCAATAACGGAG
species | Vitis vinifera |
transcript | Vv00s0194g00020.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTCGCTGAACAGCAACTTGGGGAAATCTTCAACAAAATCTCCTCTGGAAG CTTCCCTGACAGGAAAGGATGATAGCGCAGCAAAGTCAAAGAGGGGAAGGAEST: gi|161718037|gb|FC067579.1|FC067579
genomic: TTCGCTGAACAGCAACTTGGGGAAATCTTCAACAAAATCTCCTCTGGAAGgtttatttgt ... ctttgtgaagCTTCCCTGACAGGAAAGGATGATAGCGCAGCAAAGTCAAAGAGGGGAAGGA
EST: TTCGCTGAACAGCAACTTGGGGAAATCTTCAACAAAATCTCCTCTGGAAG CTTCCCTGACAGGAAAGGATGATAGCACAGCAAAGTCAAAGAGGGGAAGGAEST: gi|71859719|gb|DT008774.1|DT008774
genomic: TTCGCTGAACAGCAACTTGGGGAAATCTTCAACAAAATCTCCTCTGGAAGgtttatttgt ... ctttgtgaagCTTCCCTGACAGGAAAGGATGATAGCGCAGCAAAGTCAAAGAGGGGAAGGA
EST: TTCGCTGAACAGCAACTTGGGGAAATCTTCAACAAAATCTCCTCTGGAAG CTTCCCTGACAGGAAAGGATGATAGCACAGCAAAGTCAAAGAGGGGAAGGAEST: gi|33409317|gb|CF214944.1|CF214944
genomic: TTCGCTGAACAGCAACTTGGGGAAATCTTCAACAAAATCTCCTCTGGAAGgtttatttgt ... ctttgtgaagCTTCCCTGACAGGAAAGGATGATAGCGCAGCAAAGTCAAAGAGGGGAAGGA
EST: TTCGCTGAACAGCAACTTGGGGAAATCTTCAACAAAATCTCCTCTGGAAG CTTCCCTGACAGGAAAGGATGATAGCACAGCAAAGTCAAAGAGGGGAAGGAEST: gi|30252933|gb|CB970484.1|CB970484
genomic: TTCGCTGAACAGCAACTTGGGGAAATCTTCAACAAAATCTCCTCTGGAAGgtttatttgt ... ctttgtgaagCTTCCCTGACAGGAAAGGATGATAGCGCAGCAAAGTCAAAGAGGGGAAGGA
EST: TTCGCTGAACAGCAACTTGGGGAAATCTTCAACAAAATCTCCTCTGGAAG CTTCCCTGACAGGAAAGGATGATAGCACAGCAAAGTCAAAGAGGGGAAGGA
genomic: TTCGCTGAACAGCAACTTGGGGAAATCTTCAACAAAATCTCCTCTGGAAGgtttatttgt ... ctttgtgaagCTTCCCTGACAGGAAAGGATGATAGCGCAGCAAAGTCAAAGAGGGGAAGGA
gtttctgaaacacccttttttttgtttgtttttctgtttgaattcctttgtgaagCTTCCCTGACAGGAAAGGATGATAGCGCAGCAAAGTCAAAGAGGGGAAGGAAAGTTCAGTTCAATAACGGAG
ttcctttgt CT-rich tract
ttttttttgtttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcttctttttccccatatgttatggaatggtgaaaacagtttgctgtttctgaaacacccttttttttgtttgtttttctgtttgaattcctttgtgaagCTTCCCTGACAGGAAAGGATGATAGCGCAGCAAAGTCAAAGAGGGGAAGGAAAGTTCAGTTCAATAACGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - -tttcccc
- - - - - - - - - - - - - - - -gaaaaca
- - - - - - - - - - - - - - - - - - - - -tgctgtt