1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...ctttgttgtagtgcttctattagcatgatggtttcttaattgatgcacagtgtagaattgttgaatatttctgatcacttaatactttattctttatcagACCAGAAAATGGGAGTGATCATCATGAAAGTGCTTGTGATGAAG
species | Vitis vinifera |
transcript | Vv00s0181g00120.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCATGTTTCCTTACGAGCTCTGAGGATAATACTCTTCGTTTATTCTCATT ACCAGAAAATGGGAGTGATCATCATGAAAGTGCTTGTGATGAAGEST: gi|351039899|gb|FQ464937.1|FQ464937
genomic: TCATGTTTCCTTACGAGCTCTGAGGATAATACTCTTCGTTTATTCTCATTgtgagtctat ... tctttatcagACCAGAAAATGGGAGTGATCATCATGAAAGTGCTTGTGATGAAG
EST: TCATGTTTCCTTACGAGCTCTGAGGATAATACTCTTCGTTTATTCTCATT ACCAGAAAATGGGAGTGATCATCATGAAAGTGCTTGTGATGAAGEST: gi|351018924|gb|FQ426423.1|FQ426423
genomic: TCATGTTTCCTTACGAGCTCTGAGGATAATACTCTTCGTTTATTCTCATTgtgagtctat ... tctttatcagACCAGAAAATGGGAGTGATCATCATGAAAGTGCTTGTGATGAAG
EST: TCATGTTTCCTTACGAGCTCTGAGGGTAATACTCTTCGTTTATTCTCATT ACCAGAAAATGGGAGTGATCATCATGAAAGTGCTTGTGATGAAGEST: gi|33404273|gb|CF209900.1|CF209900
genomic: TCATGTTTCCTTACGAGCTCTGAGGATAATACTCTTCGTTTATTCTCATTgtgagtctat ... tctttatcagACCAGAAAATGGGAGTGATCATCATGAAAGTGCTTGTGATGAAG
EST: TCATGTTTCCTTACGAGCTCTGAGGATAATACTCTTCGTTTATTCTCATT ACCAGAAAATGGGAGTGATCATCATGAAAGTGCTTGTGATGAAGEST: gi|351047461|gb|FQ454953.1|FQ454953
genomic: TCATGTTTCCTTACGAGCTCTGAGGATAATACTCTTCGTTTATTCTCATTgtgagtctat ... tctttatcagACCAGAAAATGGGAGTGATCATCATGAAAGTGCTTGTGATGAAG
EST: TCATGTTTCCTTACGAGCTCTGAGGATAATACTCTTCGTTTATTCTCATT ACCAGAAAATGGGAGTGATCATCATGAAAGTGCTTGTGATGAAGEST: gi|351028547|gb|FQ444828.1|FQ444828
genomic: TCATGTTTCCTTACGAGCTCTGAGGATAATACTCTTCGTTTATTCTCATTgtgagtctat ... tctttatcagACCAGAAAATGGGAGTGATCATCATGAAAGTGCTTGTGATGAAG
EST: TCATGTTTCCTTACGAGCTCTGAGGATAATACTCTTCGTTTATTCTCATT ACCAGAAAATGGGAGTGATCATCATGAAAGTGCTTGTGATGAAGEST: gi|351052700|gb|FQ453808.1|FQ453808
genomic: TCATGTTTCCTTACGAGCTCTGAGGATAATACTCTTCGTTTATTCTCATTgtgagtctat ... tctttatcagACCAGAAAATGGGAGTGATCATCATGAAAGTGCTTGTGATGAAG
EST: TCATGTTTCCTTACGAGCTCTGAGGATAATACTCTTCGTTTATTCTCATT ACCAGAAAATGGGAGTGATCATCATGAAAGTGCTTGTGATGAAGEST: gi|33404557|gb|CF210184.1|CF210184
genomic: TCATGTTTCCTTACGAGCTCTGAGGATAATACTCTTCGTTTATTCTCATTgtgagtctat ... tctttatcagACCAGAAAATGGGAGTGATCATCATGAAAGTGCTTGTGATGAAG
EST: TCATGTTTCCTTACGAGCTCTGAGGATAATACTCTTCGTTTATTCTCATT ACCAGAAAATGGGAGTGATCATCATGAAAGTGCTTGTGATGAAGEST: gi|352798434|gb|FQ480459.1|FQ480459
genomic: TCATGTTTCCTTACGAGCTCTGAGGATAATACTCTTCGTTTATTCTCATTgtgagtctat ... tctttatcagACCAGAAAATGGGAGTGATCATCATGAAAGTGCTTGTGATGAAG
EST: TCATGTTTCCTTACGAGCTCTGAGGATAATACTCTTCGTTTATTCTCATT ACCAGAAAATGGGAGTGATCATCATGAAAGTGCTTGTGATGAAGEST: gi|351024039|gb|FQ423462.1|FQ423462
genomic: TCATGTTTCCTTACGAGCTCTGAGGATAATACTCTTCGTTTATTCTCATTgtgagtctat ... tctttatcagACCAGAAAATGGGAGTGATCATCATGAAAGTGCTTGTGATGAAG
EST: TCATGTTTCCTTACGAGCTCTGAGGATAATACTCTTCGTTTATTCTCATT ACCAGAAAATGGGAGTGATCATCATGAAAGTGCTTGTGACGAAGEST: gi|349832306|gb|FQ420867.1|FQ420867
genomic: TCATGTTTCCTTACGAGCTCTGAGGATAATACTCTTCGTTTATTCTCATTgtgagtctat ... tctttatcagACCAGAAAATGGGAGTGATCATCATGAAAGTGCTTGTGATGAAG
EST: TCATGTTTCCTTACGAGCTCTGAGGATAATACTCTTCGTTTATTCTCATT ACCAGAAAATGGGAGTGATCATCATGAAAGTGCTTGTGATGAAG
genomic: TCATGTTTCCTTACGAGCTCTGAGGATAATACTCTTCGTTTATTCTCATTgtgagtctat ... tctttatcagACCAGAAAATGGGAGTGATCATCATGAAAGTGCTTGTGATGAAG
cacagtgtagaattgttgaatatttctgatcacttaatactttattctttatcagACCAGAAAATGGGAGTGATCATCATGAAAGTGCTTGTGATGAAG
ctttattctttatc CT-rich tract
acttaatactttattc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctttgttgtagtgcttctattagcatgatggtttcttaattgatgcacagtgtagaattgttgaatatttctgatcacttaatactttattctttatcagACCAGAAAATGGGAGTGATCATCATGAAAGTGCTTGTGATGAAG
- - - - - -tgcttct
- - - - - - - - - - - gcatgat
- - - - - - - - - - - - - - - - - - - - -gatgcac