1 5' 3' | 2 5' 3' | 3 5' 3' |
...gaattattcatatattgtgagtaattttctacggtctgcactactagaactggtgggtcatgtcctgatgataatgtaagttatttggtttgattttcagGAAGGATAGCTTCATCACCCACAGAGCATTTTGTGATGCTTTAGCTGAAGAAAGTGCAAGGCTTTCAGTGATGAACTCAACCAACCAACTTCTCAATCTT
species | Vitis vinifera |
transcript | Vv00s0179g00170.t01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
agaactggtgggtcatgtcctgatgataatgtaagttatttggtttgattttcagGAAGGATAGCTTCATCACCCACAGAGCATTTTGTGATGCTTTAGCTGAAGAAAGTGCAAGGCTTTCAGTGATGAACTCAACCAACCAACTTCTCAATCTT
ttttc CT-rich tract
ataatgtaagttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaattattcatatattgtgagtaattttctacggtctgcactactagaactggtgggtcatgtcctgatgataatgtaagttatttggtttgattttcagGAAGGATAGCTTCATCACCCACAGAGCATTTTGTGATGCTTTAGCTGAAGAAAGTGCAAGGCTTTCAGTGATGAACTCAACCAACCAACTTCTCAATCTT
- - - - - - - - - - - - - - - - ggtctgc
- - - - - - - - - - - - - - - - - - - - - - - - - tggtggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgtc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgatga