Sequence
atgc intronic sequence ATGC exonic sequencegttgttcatattctattagtttcttctgattttatgttcctggttgcctgttggagctgttcagtaaaatggctctcctaaatcccaggatagatatagcatcctgtaactgatggttttattttattttatttgttttatttttatattcagGTTGAAGATCCATTGTCGGAAGCTACAAAGTACTTAAAGCTGCTTCAGAAGAACTCACCTGATTCATTGGAAACACACTTGCTTTCTTTTGAAGTGAATA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g05110.t01 (Vitis vinifera), 3'ss of exon 19
lower sequence: GLYMA15G01580.1 (Glycine max), 3'ss of exon 19
gttgttcatattctattagtttcttctgattttatgttcctggttgcctgttggagctgttcagtaaaatggctctcctaaatcccaggatagatatagcatcctgtaactgatggttttattttattttatttgttttatttttatattcagGTTGAAGATCCATTGTCGGAAGCTACAAAGTACTTAAAGCTGCTTCAGAAGAACTCACCTGATTCATTGGAAACACACTTGCTTTCTTTTGAAGTGAATA
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--------------------------------------------------cggaaattattgtgataaattatgcttattgagtt-attgtaattgttaaggctgatattgtactgttt-attgtgctgt-tgtgcaattttctcctgcttagGTCGAAGATCCTTTGTTGGAAGCCACAAAATACTTGAAGCTGCTGCAGAAGAACTCACCTGATTCATTGGAGACACACTTTCTCTCTTTTGAATTATATA
upper sequence: Vv09s0002g05110.t01 (Vitis vinifera), 3'ss of exon 19
lower sequence: GLYMA07G03850.1 (Glycine max), 3'ss of exon 19
gttgttcatattctattagtttcttctgattttatgttcctggttgcctgttggagctgttcagtaaaatggctctcctaaatcccaggatagatatagcatcctgtaactgatggttttattttattttatttgttttatttttatattcagGTTGAAGATCCATTGTCGGAAGCTACAAAGTACTTAAAGCTGCTTCAGAAGAACTCACCTGATTCATTGGAAACACACTTGCTTTCTTTTGAAGTGAATA
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-----------------------------------------------cagtgtcag--gtttatcaaactcgctaatttgaatgtcaggatgtttcta-catattcattttagaaattcacctttttcttgtgtgttctcccct---atttagGTTGAAGATCCACTGTCAGAAGCTACTAAATACTTGAAGTTGCTGCAGAAGAATTCCCCTGATTCATTGGAGACGCACTTGCTCTCTTTTGAATTATATA
upper sequence: Vv09s0002g05110.t01 (Vitis vinifera), 3'ss of exon 19
lower sequence: GLYMA08G22180.1 (Glycine max), 3'ss of exon 19
gttgttcatattctattagtttcttctgattttatgttcctggttgcctgttggagctgttcagtaaaatggctctcctaaatcccaggatagatatagcatcctgtaactgatggttttattttattttatttgttttatttttatattcagGTTGAAGATCCATTGTCGGAAGCTACAAAGTACTTAAAGCTGCTTCAGAAGAACTCACCTGATTCATTGGAAACACACTTGCTTTCTTTTGAAGTGAATA
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-----------------------------------------------gtgtcag----gtttatcaaagtcgctaatttgaatgccaaaatgtttcta-cacaaattcatttttgaaattcacctttttcttgtgtgtt-ttcccctatttagGTTGAAGATCCACTGTCAGAAGCTACTAAATACTTGAAGTTGCTGCAGAAGAATTCCCCTGATTCATTGGAGACGCACTTGCTCTCTTTTGAATTATATAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161720397|gb|FC070189.1|FC070189EST: GACATGTAAAGCCTGTAGACCCAGATCCACATGGGGAGAAGTTATTGCAG GTTGAAGATCCATTGTCGGAAGCTACAAAGTACTTAAAGCTGCTTCAGAAG
genomic: GACATGTAAAGCCTGTAGACCCAGATCCACATGGGGAGAAGTTATTGCAGgttgttcata ... ttatattcagGTTGAAGATCCATTGTCGGAAGCTACAAAGTACTTAAAGCTGCTTCAGAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcatcctgtaactgatggttttattttattttatttgttttatttttatattcagGTTGAAGATCCATTGTCGGAAGCTACAAAGTACTTAAAGCTGCTTCAGAAGAACTCACCTGATTCATTGGAAACACACTTGCTTTCTTTTGAAGTGAATA
aactgat putative branch site (score: 3)
tttgttttattttt putative PPT
atggttttattttatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttgttcatattctattagtttcttctgattttatgttcctggttgcctgttggagctgttcagtaaaatggctctcctaaatcccaggatagatatagcatcctgtaactgatggttttattttattttatttgttttatttttatattcagGTTGAAGATCCATTGTCGGAAGCTACAAAGTACTTAAAGCTGCTTCAGAAGAACTCACCTGATTCATTGGAAACACACTTGCTTTCTTTTGAAGTGAATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG