1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...ttagtggggagtctgttttaattaaagtctggctacatgtaggtaagcgttctgctttcaaactacttttcattactattgattctggggactactgcagGTCCTATGTGCTGGTAAAGACCTGGCAACTGAGGAAACCACAAGCCGAATGATTAATCTGCTGAGGCAACTTCGGCAGACATTGTCGCCCTCTGCCCTGG
species | Vitis vinifera |
transcript | Vv08s0007g07240.t01 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: TGGGGCCCGACAATCAATATCTTCCCAAAATAGTTGCAGTCTTTGCTGAG GTCCTATGTGCTGGTAAAGACCTGGCAACTGAGGAAACCACAAGCCGAATGEST: gi|352769684|gb|FQ468612.1|FQ468612
genomic: TGGGGCCCAACAATCAATATCTTCCCAAAATAGTTGCAGTCTTTGCTGAGgtatcatctc ... actactgcagGTCCTATGTGCTGGTAAAGACCTGGCAACTGAGGAAACCACAAGCCGAATG
EST: TGGGGCCCAACAATCAATATCTTCCCAAAATAGTTGCAGTCTTTGCTGAG GTCCTATGTGCTGGTAAAGACCTGGCAACTGAGGAAACCACAAGCCGAATGEST: gi|110414486|gb|EC980319.1|EC980319
genomic: TGGGGCCCAACAATCAATATCTTCCCAAAATAGTTGCAGTCTTTGCTGAGgtatcatctc ... actactgcagGTCCTATGTGCTGGTAAAGACCTGGCAACTGAGGAAACCACAAGCCGAATG
EST: TGGGGCCCAACAATCAATATCTTCCCAAAATAGTTGCAGTCTTTGCTGAG GTCCTATGTGCTGGTAAAGACCTGGCAACTGAGGAAACCACAAGCCGAATGEST: gi|32246132|gb|CD711951.1|CD711951
genomic: TGGGGCCCAACAATCAATATCTTCCCAAAATAGTTGCAGTCTTTGCTGAGgtatcatctc ... actactgcagGTCCTATGTGCTGGTAAAGACCTGGCAACTGAGGAAACCACAAGCCGAATG
EST: TGGGGCCCAACAATCAATATCTTCCCAAAATAGTTGCAGTCTTTGCTGAG GTCCTATGTGCTGGTAAAGACCTGGCAACTGAGGAAACCACAAGCCGAATGEST: gi|161718955|gb|FC065096.1|FC065096
genomic: TGGGGCCCAACAATCAATATCTTCCCAAAATAGTTGCAGTCTTTGCTGAGgtatcatctc ... actactgcagGTCCTATGTGCTGGTAAAGACCTGGCAACTGAGGAAACCACAAGCCGAATG
EST: TGGGGCCCAACAATCAATATCTTCCCAAAATAGTTGCAGTCTTTGCTGAG GTCCTATGTGCTGGTAAAGACCTGGCAACTGAGGAAACCACAAGCCGAATG
genomic: TGGGGCCCAACAATCAATATCTTCCCAAAATAGTTGCAGTCTTTGCTGAGgtatcatctc ... actactgcagGTCCTATGTGCTGGTAAAGACCTGGCAACTGAGGAAACCACAAGCCGAATG
agcgttctgctttcaaactacttttcattactattgattctggggactactgcagGTCCTATGTGCTGGTAAAGACCTGGCAACTGAGGAAACCACAAGCCGAATGATTAATCTGCTGAGGCAACTTCGGCAGACATTGTCGCCCTCTGCCCTGG
tattgat putative branch site (score: 3)
ttttcattactatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttagtggggagtctgttttaattaaagtctggctacatgtaggtaagcgttctgctttcaaactacttttcattactattgattctggggactactgcagGTCCTATGTGCTGGTAAAGACCTGGCAACTGAGGAAACCACAAGCCGAATGATTAATCTGCTGAGGCAACTTCGGCAGACATTGTCGCCCTCTGCCCTGG
-tagtggg
- - - - - - - - - -aattaaa
- - - - - - - - - - - - - - - - ctacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attctgg