1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...tactatgttatgataacctttgtattatatgttagaaattgaaatccacggattcattagttttttccctctgctgatttgcccttctcttcttggccagGAACAAGATTGCACAGCGGATAGAATTTTGAGTAAACGGGAACTTCTGGAGAGTTTAATGCCATCATTGAAAGGCTTGGTTTTGGGGACCTCACAATCTT
species | Vitis vinifera |
transcript | Vv06s0004g03970.t01 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: ACACTGCAACGGTGACCCTTTTAGCACTGATGTCTGCTGCAACAGATGAT GAACAAGATTGCACAGCGGATAGAATTTTGAGTAAACGGGAACTTCTGGAGEST: gi|110365793|gb|EC929252.1|EC929252
genomic: ACACTGCAACGGTGACCCTTTTAGCACTGATGTCTGCTGCAACAGATGATgtgagttaca ... tcttggccagGAACAAGATTGCACAGCGGATAGAATTTTGAGTAAACGGGAACTTCTGGAG
EST: ACACTGCAACGGTGACCCTTTTAGCACTGATGTCTGCTGCAACAGATGAT GAACAAGATTGCACAGCGGATAGAATTTTGAGTAAACGGGAACTTCTGGAGEST: gi|22014196|gb|BQ799230.1|BQ799230
genomic: ACACTGCAACGGTGACCCTTTTAGCACTGATGTCTGCTGCAACAGATGATgtgagttaca ... tcttggccagGAACAAGATTGCACAGCGGATAGAATTTTGAGTAAACGGGAACTTCTGGAG
EST: ACACTGCAACGGTGACCCTTTTAGCACTGATGTCTGCTGCAACAGATGAT GAACAAGATTGCACAGCGGATAGAATTTTGAGTAAACGGGAACTTCTGGAGEST: gi|30127384|gb|CB912723.1|CB912723
genomic: ACACTGCAACGGTGACCCTTTTAGCACTGATGTCTGCTGCAACAGATGATgtgagttaca ... tcttggccagGAACAAGATTGCACAGCGGATAGAATTTTGAGTAAACGGGAACTTCTGGAG
EST: ACACTGCAACGGTGACCCTTTTAGCACTGATGTCTGCTGCAACAGATGAT GAACAAGATTGCACAGCGGATAGAATTTTGAGTAAACGGGAACTTCTGGAGEST: gi|110693964|gb|EE070656.1|EE070656
genomic: ACACTGCAACGGTGACCCTTTTAGCACTGATGTCTGCTGCAACAGATGATgtgagttaca ... tcttggccagGAACAAGATTGCACAGCGGATAGAATTTTGAGTAAACGGGAACTTCTGGAG
EST: ACACTGCAACGGTGACCCTTTTAGCACTGATGTCTGCTGCAACAGATGAT GAACAAGATTGCACAGCGGATAGAATTTTGAGTAAACGGGAACTTCTGGAG
genomic: ACACTGCAACGGTGACCCTTTTAGCACTGATGTCTGCTGCAACAGATGATgtgagttaca ... tcttggccagGAACAAGATTGCACAGCGGATAGAATTTTGAGTAAACGGGAACTTCTGGAG
ccacggattcattagttttttccctctgctgatttgcccttctcttcttggccagGAACAAGATTGCACAGCGGATAGAATTTTGAGTAAACGGGAACTTCTGGAGAGTTTAATGCCATCATTGAAAGGCTTGGTTTTGGGGACCTCACAATCTT
tgctgat putative branch site (score: 3)
ttttttccctctgctg CT-rich tract
attcattagtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tactatgttatgataacctttgtattatatgttagaaattgaaatccacggattcattagttttttccctctgctgatttgcccttctcttcttggccagGAACAAGATTGCACAGCGGATAGAATTTTGAGTAAACGGGAACTTCTGGAGAGTTTAATGCCATCATTGAAAGGCTTGGTTTTGGGGACCTCACAATCTT
- - - - - - - - - - - - - - - - -agaaatt
- - - - - - - - - - - - - - - - - - - - -aaatcca