1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
gttctcaactttgcttgcccacttaattgttgatgttttggttccttttcttgtcctcaaatcccctttgatcagGTACGGTTGTTGATACCAAGATCTGCCACCCTACCGAGTTTGATTTTTACCTCAATAGCCATGCTGGAATTCAG
species | Vitis vinifera |
transcript | Vv06s0061g01040.t01 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: AGATCATAGAAGTCGTGATTTGACAGATAGGAGTGGCAACATTTTACCAG GTACGGTTGTTGATACCAAGATCTGCCACCCTACCGAGTTTGATTTTTACCEST: gi|30133651|gb|CB918990.1|CB918990
genomic: AGATCATAGAAGTCGTGATTTGACAGATAGGAGTGGCAACATTTTACCAGgttctcaact ... ctttgatcagGTACGGTTGTTGATACCAAGATCTGCCACCCTACCGAGTTTGATTTTTACC
EST: AGATCATAGAAGTCGTGATTTGACAGATAGGAGTGGCAACATTTTACCAG GTACGGTTGTTGATACCAAGATCTGCCACCCTACCGAGTTTGATTTTTACCEST: gi|110374283|gb|EC938965.1|EC938965
genomic: AGATCATAGAAGTCGTGATTTGACAGATAGGAGTGGCAACATTTTACCAGgttctcaact ... ctttgatcagGTACGGTTGTTGATACCAAGATCTGCCACCCTACCGAGTTTGATTTTTACC
EST: AGATCATAGAAGTCGTGATTTGACAGATAGGAGTGGCAACATTTTACCAG GTACGGTTGTTGATACCAAGATCTGCCACCCTACCGAGTTTGATTTTTACCEST: gi|33404266|gb|CF209893.1|CF209893
genomic: AGATCATAGAAGTCGTGATTTGACAGATAGGAGTGGCAACATTTTACCAGgttctcaact ... ctttgatcagGTACGGTTGTTGATACCAAGATCTGCCACCCTACCGAGTTTGATTTTTACC
EST: AGATCATAGAAGTCGTGATTTGACAGATAGGAGTGGCAACATTTTACCAG GTACGGTCGTTGATACCAAGATCTGCCACCCTACCGAGTTTGATTTTCACCEST: gi|110401223|gb|EC967826.1|EC967826
genomic: AGATCATAGAAGTCGTGATTTGACAGATAGGAGTGGCAACATTTTACCAGgttctcaact ... ctttgatcagGTACGGTTGTTGATACCAAGATCTGCCACCCTACCGAGTTTGATTTTTACC
EST: AGATCATAGAAGTCGTGATTTGACAGATAGGAGTGGCAACATTTTACCAG GTACGGTTGTTGATACCAAGATCTGCCACCCTACCGAGTTTGATTTTTACC
genomic: AGATCATAGAAGTCGTGATTTGACAGATAGGAGTGGCAACATTTTACCAGgttctcaact ... ctttgatcagGTACGGTTGTTGATACCAAGATCTGCCACCCTACCGAGTTTGATTTTTACC
acttaattgttgatgttttggttccttttcttgtcctcaaatcccctttgatcagGTACGGTTGTTGATACCAAGATCTGCCACCCTACCGAGTTTGATTTTTACCTCAATAGCCATGCTGGAATTCAG
tgttgat putative branch site (score: 4)
ttccttttcttgtcct putative PPT
atgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttctcaactttgcttgcccacttaattgttgatgttttggttccttttcttgtcctcaaatcccctttgatcagGTACGGTTGTTGATACCAAGATCTGCCACCCTACCGAGTTTGATTTTTACCTCAATAGCCATGCTGGAATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA