Sequence
atgc intronic sequence ATGC exonic sequence...tttattagtagatacatgattgattgcctgcagtttaaatgaattttccgtagttatatccagtcttttcacaccatggttgttcatttttgaggtgcagATGCTATATAAAATTGTATGATTCTCCTTCAAAGTCAGCTGCCGAAGAAGAAGATGAAATGTCAAGGTTACTTCCTTCTCAGAAAAAGAAAATGAGGCAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv09s0002g05110.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA13G43760.1 (Glycine max), 3'ss of exon 17
-----tttattagtagat--acatgattgattgcctgcagtttaaatgaattttccgtagttatatccagtcttttcacaccatggttgttcatttttgaggtgcagATGCTATATAAAATTGTATGATTCTCCTTCAAAGTCAGCTGCCGAAGAAGAAGATGAAATGTCAAGGTTACTTCCTTCTCAGAAAAAGAAAATGAGGCAA
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gggactgccttaacatttcggcctaaattaatatttgca-----aatgaaatttccttctgattttgcaat--tacgatctcctgcttgtaatatttggagctgcagATGTTATATCAAATTGCATGATTCTCCCCCAAAGTCAACAGCCGAGGAAGATAATGACATGTCTAAGTTGCTTCCTTCTCAAAAAAAGAAAATGAGGCAA
upper sequence: Vv09s0002g05110.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA07G03850.1 (Glycine max), 3'ss of exon 17
tttattagtagatacatgattgattgcctgcagtttaaatgaattttccgtagttatatccagtcttt-tcacaccatggttgttcatttttgaggtgcagATGCTATATAAAATTGTATGATTCTCCTTCAAAGTCAGCTGCCGAAGAAGAAGATGAAATGTCAAGGTTACTTCCTTCTCAGAAAAAGAAAATGAGGCAA
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-ttggttttatgtcctaaacaacgctccttaaggaatgttgtaactgctgagttctgattttgtgtttatgatctcatgaatgtaacactttgagctgcagATGCTATATTAAGTTGCATGATTCTCCTCCAAAGTCTACAGCAGAGGAAGATGATAATATGTCAAAGTTGCTTCCTTCTCAGAAGAAGAAAATGAGACAA
upper sequence: Vv09s0002g05110.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA08G22180.1 (Glycine max), 3'ss of exon 17
tttat-tagtagatacatgattgattgcctgcagtttaaatgaattttccgtagttatatccagtcttttcacaccatggttgttcatttttgaggtgcagATGCTATATAAAATTGTATGATTCTCCTTCAAAGTCAGCTGCCGAAGAAGAAGATGAAATGTCAAGGTTACTTCCTTCTCAGAAAAAGAAAATGAGGCAA
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tttatgtcctaaatgccttagttaatactagtaaagcaatgtacttctgagttctgattttgtgt-ttatgatctcatgaatgtaacactttgagctgcagAGGCTATATTAAGTTGCATGATTCTCCCCCAAAGTCTACAGCAGAGGAAGATGATAATATGTCAAAGTTGCTTCCTTCTCAGAAGAAGAAAATGAGACAA
upper sequence: Vv09s0002g05110.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA15G01580.1 (Glycine max), 3'ss of exon 17
---tttattagtagatacatgattgattgcctgcagtttaaatgaattttccgtagttatatccagtcttttcacaccatggttgttcatttttgaggtgcagATGCTATATAAAATTGTATGATTCTCCTTCAAAGTCAGCTGCCGAAGAAGAAGATGAAATGTCAAGGTTACTTCCTTCTCAGAAAAAGAAAATGAGGCAA
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gggactgctttaacatttcagcctaaattcatata-tgcaaatgaaatttcctt--ctgattttgcatttatgatctcttgcttgtaatatttggagctgcagATGTTATATCGAATTGCATGATTCTCCTCCAAAGTTGACAACAGAGGAAGATAATGATCTGTCTAAGTTGCTTCCTTCTCAAAAAAAGAAAATGAGGCAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161720397|gb|FC070189.1|FC070189EST: CGGTTGCATTCACATGCGTATTTTCGCAAAGCAGCTAGTGGAGCTATCAG ATGCTATATAAAATTGTATGATTCTCCTTCAAAGTCAGCTGCTGAAGAAGA
genomic: CGGTTGCATTCACATGCGTATTTTCGCAAAGCAGCTAGTGGAGCTATCAGgtgtggcttt ... tgaggtgcagATGCTATATAAAATTGTATGATTCTCCTTCAAAGTCAGCTGCCGAAGAAGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttccgtagttatatccagtcttttcacaccatggttgttcatttttgaggtgcagATGCTATATAAAATTGTATGATTCTCCTTCAAAGTCAGCTGCCGAAGAAGAAGATGAAATGTCAAGGTTACTTCCTTCTCAGAAAAAGAAAATGAGGCAA
ttcattttt CT-rich tract
tagttatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttattagtagatacatgattgattgcctgcagtttaaatgaattttccgtagttatatccagtcttttcacaccatggttgttcatttttgaggtgcagATGCTATATAAAATTGTATGATTCTCCTTCAAAGTCAGCTGCCGAAGAAGAAGATGAAATGTCAAGGTTACTTCCTTCTCAGAAAAAGAAAATGAGGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - catgatt
- - - - - - - - - - - - - cctgcag
- - - - - - - - - - - - - - - - - - aaatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatggt