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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttatagaatttactactaaccttagatacacatcgagatggttttgttatttacaacatggtaacatctgtgcagTTGGCATGCACCTTAACGTTTGAAGCTGTTCATGGCTCCTCCTGTGATGCTGGAATTAATCATCCAAACCAATACTTCAGTGATAGCCAAAAGATCCTGC

Basic information

species Vitis vinifera
transcript Vv05s0051g00930.t01
intron # 17
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0051g00930.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA05G28150.1 (Glycine max), 3'ss of exon 17
----gttatagaatttactactaaccttagatacaca----tcgaga--tggttttgttattt-acaacatgg-taacatctgtgcagTTGGCATGCACCTTAACGTTTGAAGCTGTTCATGGCTCCTCCTGTGATGCTGGAATTAATCATCCAAACCAATACTTCAGTGATAGCCAAAAGATCCTGC
    ||  ||| |    |  || | |||  ||   ||    || |    ||| |||| ||| | |  | |||| |||| | |||||||||||| |||||||| || ||||||||| ||||||||    | |||||||| || ||||| |||||||| |||||||||||||| || ||||||||  |  
gtaggtcttagcacaccccgctgaacttcaattatcaattttcaacctttggatttgatatctgattatatggataacgtttgtgcagTTGGCTTGCACCTTGACATTTGAAGCTCTTCATGGCATGCCGTGTGATGCAGGGATTAACCATCCAAATCAATACTTCAGTGACAGTCAAAAGATATTAA

upper sequence: Vv05s0051g00930.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA08G11130.1 (Glycine max), 3'ss of exon 17
----gttatagaatttactactaaccttagatacaca----tcgaga----tggttttgttattt-acaacatgg-taacatctgtgcagTTGGCATGCACCTTAACGTTTGAAGCTGTTCATGGCTCCTCCTGTGATGCTGGAATTAATCATCCAAACCAATACTTCAGTGATAGCCAAAAGATCCTGC
    ||  ||| |    | ||| |  ||  |||  ||    || | |    ||| |||| ||| | |  | |||| |||| | | |||||||||| |||||||| || ||||||||| ||||||||    | |||||||| || ||||| |||||||| |||||||||||||| || ||||||||  |  
gtaggtcttagcacaacccactgaatttcaataatcaattttcaaaacctttggatttgatatctgattatatggataacgtttatgcagTTGGCTTGCACCTTGACATTTGAAGCTCTTCATGGCATGACGTGTGATGCAGGGATTAACCATCCAAATCAATACTTCAGTGACAGTCAAAAGATATTAA

upper sequence: Vv05s0051g00930.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: AT1G67320.2 (Arabidopsis thaliana), 3'ss of exon 17
gttatagaatttactactaaccttagatacacatcgagatggt------------tttgttatttacaacatggtaacatctg-tgcagTTGGCATGCACCTTAACGTTTGAAGCTGTTCATGGCTCCTCCTGTGATGCTGGAATTAATCATCCAAACCAATACTTCAGTGATAGCCAAAAGATCCTGC
|| ||  |  |||      |||| | ||     | | ||| ||              || | ||    | |||     || || |  || | |||||||||||||| |||||||||||| ||||  | || |||||| |||| || || ||||| |||||||||||    || || || ||||| ||| 
gtgattaatcttaactaagacctcaaatctttttggcgattgtagcaataactaacatgctcttcttcatatgcatttatatggtaaagCTCGCATGCACCTTAACCTTTGAAGCTGTTTATGGTACATCATGTGATACTGGTATCAACCATCCCAACCAATACTTTGAAGAAAGTCAGAAGATTCTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttagatacacatcgagatggttttgttatttacaacatggtaacatctgtgcagTTGGCATGCACCTTAACGTTTGAAGCTGTTCATGGCTCCTCCTGTGATGCTGGAATTAATCATCCAAACCAATACTTCAGTGATAGCCAAAAGATCCTGC
                                      tggtaac  putative branch site (score: 2)
                     ttttgttatttacaa  TA-rich tract