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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactctcctttcaacaacttcctacacagaaatttcttgaatcttgttttcagtacaagtgcataagcccataataatattgactaaacatcaaaatccttgatacccaaacacccattgccatgatactctttccagGTCGAGTTCTCTGGTGGGGCATTGCGGTGTGGCGAGTATGTGACCTTGCGCAAGGTTGGTGATGCAAGCCAGAAG

Basic information

species Vitis vinifera
transcript Vv16s0050g00590.t01
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110362185|gb|EC925701.1|EC925701
EST:     ACATAAAAATGGCAGATTTCAAGCAGTTTCTGGCAAGCAAAGGCATCCAG                         GTCGAGTTCTCTGGCGGGGCGTTGCGGTGTGGCGAGTATGTGACCTTGCGC
genomic: ACATAAAAATGGCAGATTTCAAGCAGTTTCTGGCAAGCAAGGGCATCCAGgtactctcct ... ctctttccagGTCGAGTTCTCTGGTGGGGCATTGCGGTGTGGCGAGTATGTGACCTTGCGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctaaacatcaaaatccttgatacccaaacacccattgccatgatactctttccagGTCGAGTTCTCTGGTGGGGCATTGCGGTGTGGCGAGTATGTGACCTTGCGCAAGGTTGGTGATGCAAGCCAGAAG
              ccttgat  putative branch site (score: 5)
                                           tactctttcc  putative PPT
      atcaaaat  TA-rich tract