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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatggaattagaactcttctacgttgtcctcatcatataattcaactaaatggccgttctaccatcttaacttctggaactggtttcattttgagcagGCACAGGATTATGAAATCTATGATCTTAAACCATTCTTTTCAAGCACTCAGTTCTCTAGGGCCCACTTTGAGTTGGATGCAGAGCGGGGTGTGATCAGGC

Basic information

species Vitis vinifera
transcript Vv01s0150g00390.t01
intron # 16
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110415663|gb|EC981588.1|EC981588
EST:     GTTCAGGACTTCCCCATATTGATGTGAAAGTGGAGGAGTTGCAAAGCAAG                         GCACAGGATTATGAAATCTATGATCTTAAACCATTCTTTTCAAGCACTCAG
genomic: GTTCAGGACTTCCCCATATTGATGTGAAAGTGGAGGAGTTGCAAAGCAAGgtaatggaat ... ttttgagcagGCACAGGATTATGAAATCTATGATCTTAAACCATTCTTTTCAAGCACTCAG
EST: gi|77580011|gb|DV218886.1|DV218886
EST:     GTTCAGGACTTCCCCATATTGATGTGAAAGTGGAGGAGTTGCAAAGCAAG                         GCACAGGATTATGAAATCTATGATCTTAAACCATTCTTTTCAAGCACTCAG
genomic: GTTCAGGACTTCCCCATATTGATGTGAAAGTGGAGGAGTTGCAAAGCAAGgtaatggaat ... ttttgagcagGCACAGGATTATGAAATCTATGATCTTAAACCATTCTTTTCAAGCACTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactaaatggccgttctaccatcttaacttctggaactggtttcattttgagcagGCACAGGATTATGAAATCTATGATCTTAAACCATTCTTTTCAAGCACTCAGTTCTCTAGGGCCCACTTTGAGTTGGATGCAGAGCGGGGTGTGATCAGGC
                     tcttaac  putative branch site (score: 2)
                                        tttcatttt  putative PPT
                                        tttcatttt  TA-rich tract