1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gtaacgacacccttgttggagacattgtcattatttgatctgcttgaaagaaacaggcatgttaaaatcagtgtgctggaaaataatgaccctatttaatgatgtagGTTCTTAATGGGTTGACCCAGAATATCTCAAGTACCAAGTTCCATCTTGGGAAGAATCCTCAAGAAAGCGTTCTGGATAGATTGCCAATCATTACTAAAG
species | Vitis vinifera |
transcript | Vv19s0015g01390.t01 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: AATCTGTAGGATTAAGTGATCCCATAGTTAAACCTGATATTGCTCTTAAG GTTCTTAATGGGTTGACCCAGAATATCTCAAGTACCAAGTTCCATCTTGGGEST: gi|33403116|gb|CF208743.1|CF208743
genomic: AATCTGTAGGATTAAGTGATCCCATAGTTAAACCTGATATTGCTCTTAAGgtaacgacac ... aatgatgtagGTTCTTAATGGGTTGACCCAGAATATCTCAAGTACCAAGTTCCATCTTGGG
EST: AATCTGTAGGATTAAGTGATCCCATAGTTAAACCTGATATTGCTCTTAAG GTTCTTAATGGGTTGACCCAGAATATCTCAAGTACCAAGTTCCATCTTGGGEST: gi|77588931|gb|DV223714.1|DV223714
genomic: AATCTGTAGGATTAAGTGATCCCATAGTTAAACCTGATATTGCTCTTAAGgtaacgacac ... aatgatgtagGTTCTTAATGGGTTGACCCAGAATATCTCAAGTACCAAGTTCCATCTTGGG
EST: TATTGCTCTTAAG GTTCTTAATGGGTTGACCCAGAATATCTCAAGTACCAAGTTCCATCTTGGG
genomic: TATTGCTCTTAAGgtaacgacac ... aatgatgtagGTTCTTAATGGGTTGACCCAGAATATCTCAAGTACCAAGTTCCATCTTGGG
acaggcatgttaaaatcagtgtgctggaaaataatgaccctatttaatgatgtagGTTCTTAATGGGTTGACCCAGAATATCTCAAGTACCAAGTTCCATCTTGGGAAGAATCCTCAAGAAAGCGTTCTGGATAGATTGCCAATCATTACTAAAG
atttaat putative branch site (score: 4)
tatttaatgatgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacgacacccttgttggagacattgtcattatttgatctgcttgaaagaaacaggcatgttaaaatcagtgtgctggaaaataatgaccctatttaatgatgtagGTTCTTAATGGGTTGACCCAGAATATCTCAAGTACCAAGTTCCATCTTGGGAAGAATCCTCAAGAAAGCGTTCTGGATAGATTGCCAATCATTACTAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA