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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggtttttttttttttaatatattgttcccagattctgataaaaagaatattgtagttcctagattttgtctggttactgaattcttctttcttcaattctgaaattatttggatgattctttgcagGAGAAATGGGCAAAAAATCTCTATATTGCGTCCGTTTGTTATGGCCGTACAGTTTCATGAGTTGCCTAACATTTTCTTGAGGTGTTCCCTGACACCATTG

Basic information

species Vitis vinifera
transcript Vv09s0002g03680.t01
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g03680.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA04G09070.2 (Glycine max), 3'ss of exon 15
gtggtttttttttttttaatatattgttcccagattctgataaaaagaatattgtagttcctagattttgtctggttactga-attcttctttcttcaattctgaaatt-atttggatgattctttgcagGAGAAATGGGCAAAAAATCTCTATATTGCGTCCGTTTGTTATGGCCGTACAGTTTCATGAGTTGCCTAACATTTTCTTGAGGTGTTCC-CTGACACCATTG-----
                                               || |||| |    ||   |||  | |  | | ||  |||| |   ||    || || | |||   ||   |  |   |||||||| ||||||||||| || ||||||||||| ||  ||||||||||  | ||||| || | |  ||   ||       ||||| | |    |||||| ||||      
--------------------------------------------gtaaacattgca---tctgattttcctttattcattgccattccttgatcacacatgctaacatttgatttttttttctcttgcagGAAAAATGGGCAAAGAACCTCTATATTGCATCTATTTGTTATGGGAGAACAGTGTCTTAAACTGATCAAA------TTGAGATTTCTGGCTGACATCATTTTGACC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|156737302|gb|EV241423.1|EV241423
EST:     AAACACAGGAGACACTTCGAACTTCAGCATTTCCTAGTACACATGTTAAG                         GAGAAATGGGCAAAAAATCTCTATATTGCGTCCGTTTGTTATGGCCGTACA
genomic: AAACACAGGAGACACTTCGAACTTCAGCATTTCCTAGTACACATGTTAAGgtggtttttt ... ttctttgcagGAGAAATGGGCAAAAAATCTCTATATTGCGTCCGTTTGTTATGGCCGTACA
EST: gi|161714228|gb|FC064143.1|FC064143
EST:     AAACACAGGAGACACTTCGAACTTCAGCATTTCCTAGTACACATGTTAAG                         GAGAAATGGGCAAAAAATCTCTATATTGCGTCCGTTTGTTATGGCCGTACA
genomic: AAACACAGGAGACACTTCGAACTTCAGCATTTCCTAGTACACATGTTAAGgtggtttttt ... ttctttgcagGAGAAATGGGCAAAAAATCTCTATATTGCGTCCGTTTGTTATGGCCGTACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggttactgaattcttctttcttcaattctgaaattatttggatgattctttgcagGAGAAATGGGCAAAAAATCTCTATATTGCGTCCGTTTGTTATGGCCGTACAGTTTCATGAGTTGCCTAACATTTTCTTGAGGTGTTCCCTGACACCATTG
                                             ttctttgc  CT-rich tract
                       aattctgaaattattt  TA-rich tract