1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
...agtcaaatggttggtgaggggaaccggaactatgaagccataggtttgaggcttgttgtccacaaaattgcaattgtatactgacattttatctttgcagATGCTGTTATTGAGCAAGCAAACTGGGACACCTCTAAAGTAAGAGATAAGCTTCGTCGTGACATAGATGCACATGTTGCTGCAGTTCGTGCTACCAAACT
species | Vitis vinifera |
transcript | Vv09s0002g02200.t01 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: TCATGGTTGCACAAAGGTTATCATGACTCAATTTGATGAAGAACGTGCAG ATGCTGTTATTGAGCAAGCAAACTGGGACACCTCTAAAGTAAGAGATAAGCEST: gi|71883647|gb|DT032702.1|DT032702
genomic: TCATGGTTGCACAAAGGCTGTCATGACTCAATTTGATGAAGAATGTGCAGgtatagttac ... atctttgcagATGCTGTTATTGAGCAAGCAAACTGGGACACCTCTAAAGTAAGAGATAAGC
EST: GCACAAAGGTTATCATGACTCAATTTGATGAAGAACGTGCAG ATGCTGTTATTGAGCAAGCAAACTGGGACACCTCTAAAGTAAGAGATAAGCEST: gi|161716580|gb|FC065551.1|FC065551
genomic: GCACAAAGGCTGTCATGACTCAATTTGATGAAGAATGTGCAGgtatagttac ... atctttgcagATGCTGTTATTGAGCAAGCAAACTGGGACACCTCTAAAGTAAGAGATAAGC
EST: TCATGGTTGCACAAAGGTTATCATGACTCAATTTGATGAAGAACGTGCAG ATGCTGTTATTGAGCAAGCAAACTGGGACACCTCTAAAGTAAGAGATAAGCEST: gi|71881154|gb|DT030209.1|DT030209
genomic: TCATGGTTGCACAAAGGCTGTCATGACTCAATTTGATGAAGAATGTGCAGgtatagttac ... atctttgcagATGCTGTTATTGAGCAAGCAAACTGGGACACCTCTAAAGTAAGAGATAAGC
EST: GCACAAAGGTTATCATGACTCAATTTGATGAAGAACGTGCAG ATGCTGTTATTGAGCAAGCAAACTGGGACACCTCTAAAGTAAGAGATAAGC
genomic: GCACAAAGGCTGTCATGACTCAATTTGATGAAGAATGTGCAGgtatagttac ... atctttgcagATGCTGTTATTGAGCAAGCAAACTGGGACACCTCTAAAGTAAGAGATAAGC
ttgaggcttgttgtccacaaaattgcaattgtatactgacattttatctttgcagATGCTGTTATTGAGCAAGCAAACTGGGACACCTCTAAAGTAAGAGATAAGCTTCGTCGTGACATAGATGCACATGTTGCTGCAGTTCGTGCTACCAAACT
tactgac putative branch site (score: 1)
ttttatcttt CT-rich tract
attttatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtcaaatggttggtgaggggaaccggaactatgaagccataggtttgaggcttgttgtccacaaaattgcaattgtatactgacattttatctttgcagATGCTGTTATTGAGCAAGCAAACTGGGACACCTCTAAAGTAAGAGATAAGCTTCGTCGTGACATAGATGCACATGTTGCTGCAGTTCGTGCTACCAAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - ggtgagg
- - - - - - - - - - - - - - - - -gaagcca
- - - - - - - - - - - - - - - - - - - - - - - - -ggcttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgacat