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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaagggagatgatgctgttttgaatatatctacactgacttgattattccatagtatctgattggctgtgattgcatgttggttacagATTGGTCTGGCTATGTCTCCTCTGAGCAACAATTCCTTGTTTTTGGACTATCATCGGAATCCTTTTCCTATGTTTTTCCTTCGGGGCCTCAATGTTTCCC

Basic information

species Vitis vinifera
transcript Vv08s0105g00570.t01
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0105g00570.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: LOC_Os05g28180.3 (Oryza sativa), 3'ss of exon 7
-----------------------------------------------------------------gtaaaaagggagatgatgctgttttgaatatatctacactgacttgattattccatagtatctgattggctgtgattgcat------gttggttac---------agATTGGTCTGGCTATGTCTCCTCTGAGCAACAATTCCTTGTTTTTGGACTATCATCGGAATCCTTTTCCTATGTTTTTCCTTCGGGGCCTCAATGTTTCCC
                                                                 ||||||||   ||      | | |  |||   |  |   ||  ||| || |   | | | | | | |  || | ||| | |      |||| || |         ||||||||||||| ||||| ||  | |||||||| ||||||||| | || || || ||||||||||| || ||||||||||  || ||||| ||||||||||
gtaattcttcatattttcataatccagcatgatttttaaaaacctctgtagctgtaattttatgagtaaaaagcatgacagatttatct--aattagtgcagtttggtttgcttttaagaaactttttaagtcactatcatttcttcaatctgttgctttcaattttatcagATTGGTCTGGCAATGTCCCCATTAAGCAACAACTCCTTGTTTCTTGATTACCACCGGAATCCTTTCCCAATGTTTTTCCAACGAGGCCTGAATGTTTCCC

upper sequence: Vv08s0105g00570.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GRMZM2G416667_T01 (Zea mays), 3'ss of exon 15
-----------gtaaaaagggagatgatgctgttttgaatatatctacactgacttgattattccatagtatctgattggctgtgattgcatgttggttacagATTGGTCTGGCTATGTCTCCTCTGAGCAACAATTCCTTGTTTTTGGACTATCATCGGAATCCTTTTCCTATGTTTTTCCTTCGGGGCCTCAATGTTTCCC
             |  ||  |  || |  |  |||  | |  |  | |  |   ||||    |        |||      |||| | |  |  |    | |||||||||||||| ||||| ||  |||||||||| ||||| ||| | ||||||||||| || |||||||| | ||| ||||  || || || ||||| ||  
aggcaacaccaccagcaaatggcataa--ccttttgcacttcagtttctttattttgaaagatgatgttcctctttcaacctgttactttaaatcttgt-cagATTGGTCTGGCGATGTCCCCATTGAGCAACAACTCCTTATTTCTTGACTATCATCGCAACCCTTTTCCAACGTTCTTCCAACGAGGTCTGAATGTCTCAT

upper sequence: Vv08s0105g00570.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA01G29470.1 (Glycine max), 3'ss of exon 16
gtaaaaagggagatgatgctgttttgaatatatctacactgacttgattattccatagtatctgattggctgtgattgcatgttggttacagATTGGTCTGGCTATGTCTCCTCTGAGCAACAATTCCTTGTTTTTGGACTATCATCGGAATCCTTTTCCTATGTTTTTCCTTCGGGGCCTCAATGTTTCCC
            |||   || |||| |||  || |||   |   ||||  ||   ||||  || |||     | | |  || ||  |   ||||||| ||||| ||||||||| ||||||| || ||| | || || ||||| ||||||||||||||||| ||||| ||| | ||||| || ||||| || |
----------gtatggcccttttttcaattgat-tacttggttgtgatattt--gtagttgctaatt-----ttagtttatttttttattagATTGGGCTGGCAATGTCTCCTTTGAGCAATAACTCCCTATTCTTAGACTACCATCGGAATCCTTTTCCAATGTTCTTCTTACGGGGTCTGAATGTGTCAC

upper sequence: Vv08s0105g00570.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: GLYMA03G07460.1 (Glycine max), 3'ss of exon 15
gtaaaaagggagatgatgctgttttgaatatatctacactgacttgattattccata-gtatctgattggctgtgattgcatgttggttac-agATTGGTCTGGCTATGTCTCCTCTGAGCAACAATTCCTTGTTTTTGGACTATCATCGGAATCCTTTTCCTATGTTTTTCCTTCGGGGCCTCAATGTTTCCC
            ||||  || |||| |||  ||        ||||| || |   ||  |||  |   |   | |  ||| |||||  |||  ||||||| ||||| ||||||||| ||||||| || ||| | || || ||||| ||||||||||||||||| ||||| ||| | ||||| || ||||| || |
----------gtatgacccttttttcaattgatt-------acttggttgtgagatttgtagtttgctaattttagttgaatgttttttattagATTGGGCTGGCAATGTCTCCTTTGAGCAATAACTCCCTATTCTTAGACTACCATCGGAATCCTTTTCCAATGTTCTTCTTACGGGGTCTGAATGTGTCAC

upper sequence: Vv08s0105g00570.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: AT2G38280.1 (Arabidopsis thaliana), 3'ss of exon 15
gtaaaaagggagatgatgctgttttgaatatatctacactgacttgat-tattccatagtatctgattggctgtgattgcatgttggtt-acagATTGGTCTGGCTATGTCTCCTCTGAGCAACAATTCCTTGTTTTTGGACTATCATCGGAATCCTTTTCCTATGTTTTTCCTTCGGGGCCTCAATGTTTCCC
                   | | | ||   |  || ||   | |  || | |   || || |||| |   ||  ||   ||| |   || ||||||||||||||| ||||| || ||||||||||| || |||||| | || || || ||||| || |||||| |||||||| |  | || ||||||||||| |
------------------gtttgtggagactgcctgcatgtattacatatgtattattgtttctgtt---ctaagaagacatttcttttgacagATTGGTCTGGCCATGTCACCACTGAGCAACAACTCTTTGTTTCTAGATTACCACCGGAACCCGTTTCCTGTGTTTTTCTTAAGAGGTCTCAATGTTTCTC

upper sequence: Vv08s0105g00570.t01 (Vitis vinifera), 3'ss of exon 15
lower sequence: PP1S77_89V6.1 (Physcomitrella patens), 3'ss of exon 15
gtaaaaagggagatgatg--ctgttttgaatatatctacactgacttgattat-tccatagt---atctgattggctgtg-attgcatg--ttggttacagATTGGTCTGGCTATGTCTCCTCTGAGCAACAATTCCTTGTTTTTGGACTATCATCGGAATCCTTTTCCTATGTTTTTCCTTCGGGGCCTCAATGTTTCCC
 | ||    |   | ||   |  |  |  |  | ||||  ||| |||  || | |||||| |   |||| ||    | |  |  | |||   |  || ||||||||  |||| |||||||| || |||||||||||  | ||  | ||||||||||| || |||||||||||||||||    || || || ||||| || |
-tcaatgccgctgtcataaacaatcattcaactgtctatgctggcttagttgtatccatattgttatctcatccattttctacggtatggtctatttgcagATTGGATTGGCCATGTCTCCGCTAAGCAACAATTCTCTTTTCCTAGACTATCATCGCAACCCTTTTCCTATGTTTTTTGCCCGAGGTCTGAATGTATCGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actgacttgattattccatagtatctgattggctgtgattgcatgttggttacagATTGGTCTGGCTATGTCTCCTCTGAGCAACAATTCCTTGTTTTTGGACTATCATCGGAATCCTTTTCCTATGTTTTTCCTTCGGGGCCTCAATGTTTCCC
      ttgattatt  TA-rich tract