1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
gtagggttgtcaacatgtttccttttcatggtgtatgatgtttgttgagcttttttttttcataatcgtttctctctcttatatcattgtatgttttcttttctgcagGGAATTGCTAATTGCCTTTCGCAGATCCACTGGCTATAAGCCCAGTAGAATCATATTCTACAG
species | Vitis vinifera |
transcript | Vv06s0061g01040.t01 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: AAAACAACTGCAGATCCTCATAAATGTGTAACTCATGGAGGCATGATTAG GGAATTGCTAAATGCCTTTEST: gi|351012088|gb|FQ429894.1|FQ429894
genomic: AAAACAACTGCAGATCCTCATAAAGGTGTAACTCATGGAGGCATGATTAGgtagggttgt ... ttttctgcagGGAATTGCTAATTGCCTTT
EST: AAAACAACTGCAGATCCTCATAAAGGTGTAACTCATGGAGGCATGATTAG GGAATTGCTAATTGCCTTTCGCAGATCCACTGGCTATAAGCCCAGTAGAATEST: gi|351016543|gb|FQ423970.1|FQ423970
genomic: AAAACAACTGCAGATCCTCATAAAGGTGTAACTCATGGAGGCATGATTAGgtagggttgt ... ttttctgcagGGAATTGCTAATTGCCTTTCGCAGATCCACTGGCTATAAGCCCAGTAGAAT
EST: AAAACAACTGCAGATCCTCATAAAGGTGTAACTCATGGAGGCATGATTAG GGAATTGCTAATTGCCTTTCGCAGATCCACTGGCTATAAGCCCAGTAGAATEST: gi|110374283|gb|EC938965.1|EC938965
genomic: AAAACAACTGCAGATCCTCATAAAGGTGTAACTCATGGAGGCATGATTAGgtagggttgt ... ttttctgcagGGAATTGCTAATTGCCTTTCGCAGATCCACTGGCTATAAGCCCAGTAGAAT
EST: TAAAGGTGTAACTCATGGAGGCATGATTAG GGAATTGCTAATTGCCTTTCGCAGATCCACTGGCTATAAGCCCAGTAGAATEST: gi|33404266|gb|CF209893.1|CF209893
genomic: TAAAGGTGTAACTCATGGAGGCATGATTAGgtagggttgt ... ttttctgcagGGAATTGCTAATTGCCTTTCGCAGATCCACTGGCTATAAGCCCAGTAGAAT
EST: AAAACAACTGCAGATCCTCATAAAGGTGTAACTCATGGAGGCATGATTAG GGAATTGCTAATTGCCTTTCGCAGATCCACTGGCTATAAGCCCAGTAGAATEST: gi|351021994|gb|FQ437781.1|FQ437781
genomic: AAAACAACTGCAGATCCTCATAAAGGTGTAACTCATGGAGGCATGATTAGgtagggttgt ... ttttctgcagGGAATTGCTAATTGCCTTTCGCAGATCCACTGGCTATAAGCCCAGTAGAAT
EST: AAAACAACTGCAGATCCTCATAAAGGTGTAACTCATGGAGGCATGATTAG GGAATTGCTAATTGCCTTTCGCAGATCCACTGGCTATAAGCCCAGTAGAATEST: gi|351030739|gb|FQ438577.1|FQ438577
genomic: AAAACAACTGCAGATCCTCATAAAGGTGTAACTCATGGAGGCATGATTAGgtagggttgt ... ttttctgcagGGAATTGCTAATTGCCTTTCGCAGATCCACTGGCTATAAGCCCAGTAGAAT
EST: AAAACAACTGCAGATCCTCATAAAGGTGTAACTCATGGAGGCATGATTAG GGAATTGCTAATTGCCTTTCGCAAGATCCACTGGCTEST: gi|349814521|gb|FQ399161.1|FQ399161
genomic: AAAACAACTGCAGATCCTCATAAAGGTGTAACTCATGGAGGCATGATTAGgtagggttgt ... ttttctgcagGGAATTGCTAATTGCCTTTCGCA-GATCCACTGGCT
EST: AAAACAACTGCAGATCCTCATAAAGGTGTAACTCATGGAGGCATGATTAG GGAATTGCTAATTGCCTTTCGCAGATCCACTGGCTATAAGCCCAGTAGAATEST: gi|351049114|gb|FQ431658.1|FQ431658
genomic: AAAACAACTGCAGATCCTCATAAAGGTGTAACTCATGGAGGCATGATTAGgtagggttgt ... ttttctgcagGGAATTGCTAATTGCCTTTCGCAGATCCACTGGCTATAAGCCCAGTAGAAT
EST: AAAACAACTGCAGATCCTCATAAAGGTGTAACTCATGGAGGCATGATTAG GGAATTGCTAATTGCCTTTCGCAGATCCACTGGCTATAAGCCCAGTAGAAT
genomic: AAAACAACTGCAGATCCTCATAAAGGTGTAACTCATGGAGGCATGATTAGgtagggttgt ... ttttctgcagGGAATTGCTAATTGCCTTTCGCAGATCCACTGGCTATAAGCCCAGTAGAAT
tttttttcataatcgtttctctctcttatatcattgtatgttttcttttctgcagGGAATTGCTAATTGCCTTTCGCAGATCCACTGGCTATAAGCCCAGTAGAATCATATTCTACAG
tatgttttcttttct CT-rich tract
ttatatcattgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagggttgtcaacatgtttccttttcatggtgtatgatgtttgttgagcttttttttttcataatcgtttctctctcttatatcattgtatgttttcttttctgcagGGAATTGCTAATTGCCTTTCGCAGATCCACTGGCTATAAGCCCAGTAGAATCATATTCTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT